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Concept
Clustering high-dimensional data
Summary
Clustering high-dimensional data is the cluster analysis of data with anywhere from a few dozen to many thousands of dimensions. Such high-dimensional spaces of data are often encountered in areas such as medicine, where DNA microarray technology can produce many measurements at once, and the clustering of text documents, where, if a word-frequency vector is used, the number of dimensions equals the size of the vocabulary.
Four problems need to be overcome for clustering in high-dimensional data:
Multiple dimensions are hard to think in, impossible to visualize, and, due to the exponential growth of the number of possible values with each dimension, complete enumeration of all subspaces becomes intractable with increasing dimensionality. This problem is known as the curse of dimensionality.
The concept of distance becomes less precise as the number of dimensions grows, since the distance between any two points in a given dataset converges. The discrimination of the nearest and farthest point in particular becomes meaningless:
A cluster is intended to group objects that are related, based on observations of their attribute's values. However, given a large number of attributes some of the attributes will usually not be meaningful for a given cluster. For example, in newborn screening a cluster of samples might identify newborns that share similar blood values, which might lead to insights about the relevance of certain blood values for a disease. But for different diseases, different blood values might form a cluster, and other values might be uncorrelated. This is known as the local feature relevance problem: different clusters might be found in different subspaces, so a global filtering of attributes is not sufficient.
Given a large number of attributes, it is likely that some attributes are correlated. Hence, clusters might exist in arbitrarily oriented affine subspaces.
Recent research indicates that the discrimination problems only occur when there is a high number of irrelevant dimensions, and that shared-nearest-neighbor approaches can improve results.
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