Publications related to Hypergraph

Graph neural networks (GNNs) have demonstrated promising performance across various chemistry-related tasks. However, conventional graphs only model the pairwise connectivity in molecules, failing to adequately represent higher order connections, such as m ...

Aip Publishing2024

Towards improving full-length ribosome density prediction by bridging sequence and graph-based representations

Pierre Vandergheynst, Felix Naef, Cédric Gobet, Francesco Craighero, Mohan Vamsi Nallapareddy

Translation elongation plays an important role in regulating protein concentrations in the cell, and dysregulation of this process has been linked to several human diseases. In this study, we use data from ribo-seq experiments to model ribosome dwell times ...

2024

Graph Exploration for Effective Multiagent Q-Learning

Ali H. Sayed, Ainur Zhaikhan

This article proposes an exploration technique for multiagent reinforcement learning (MARL) with graph-based communication among agents. We assume that the individual rewards received by the agents are independent of the actions by the other agents, while ...

Ieee-Inst Electrical Electronics Engineers Inc2024

Hypergraph-Based Fast Distributed AC Power Flow Optimization

Colin Neil Jones, Yuning Jiang, Yingzhao Lian, Xinliang Dai

This paper presents a novel distributed approach for solving AC power flow (PF) problems. The optimization problem is reformulated into a distributed form using a communication structure corresponding to a hypergraph, by which complex relationships between ...

New York2023

Scalable maximal subgraph mining with backbone-preserving graph convolutions

Karl Aberer, Thanh Trung Huynh, Quoc Viet Hung Nguyen, Thành Tâm Nguyên

Maximal subgraph mining is increasingly important in various domains, including bioinformatics, genomics, and chemistry, as it helps identify common characteristics among a set of graphs and enables their classification into different categories. Existing ...

ELSEVIER SCIENCE INC2023

Spectral Hypergraph Sparsifiers of Nearly Linear Size

Mikhail Kapralov, Jakab Tardos

Graph sparsification has been studied extensively over the past two decades, culminating in spectral sparsifiers of optimal size (up to constant factors). Spectral hypergraph sparsification is a natural analogue of this problem, for which optimal bounds on ...

IEEE COMPUTER SOC2022

Motif Cut Sparsifiers

Mikhail Kapralov, Mikhail Makarov, Jakab Tardos

A motif is a frequently occurring subgraph of a given directed or undirected graph G (Milo et al.). Motifs capture higher order organizational structure of G beyond edge relationships, and, therefore, have found wide applications such as in graph clusterin ...

IEEE COMPUTER SOC2022

Incompleteness of graph neural networks for points clouds in three dimensions

Michele Ceriotti, Sergey Pozdnyakov

Graph neural networks (GNN) are very popular methods in machine learning and have been applied very successfully to the prediction of the properties of molecules and materials. First-order GNNs are well known to be incomplete, i.e. there exist graphs that ...

IOP Publishing Ltd2022

A Unified Experiment Design Approach for Cyclic and Acyclic Causal Models

Negar Kiyavash, Ehsan Mokhtarian, Saber Salehkaleybar

We study experiment design for unique identification of the causal graph of a system where the graph may contain cycles. The presence of cycles in the structure introduces major challenges for experiment design as, unlike acyclic graphs, learning the skele ...

2022

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Hypergraph

Molecular hypergraph neural networks

Towards improving full-length ribosome density prediction by bridging sequence and graph-based representations

Graph Exploration for Effective Multiagent Q-Learning

Hypergraph-Based Fast Distributed AC Power Flow Optimization

Scalable maximal subgraph mining with backbone-preserving graph convolutions

Spectral Hypergraph Sparsifiers of Nearly Linear Size

Space-Efficient Representations of Graphs

Motif Cut Sparsifiers

Incompleteness of graph neural networks for points clouds in three dimensions

A Unified Experiment Design Approach for Cyclic and Acyclic Causal Models

Graph Chatbot

Chat with Graph Search

Hypergraph-Based Fast Distributed AC Power Flow Optimization

Scalable maximal subgraph mining with backbone-preserving graph convolutions

Motif Cut Sparsifiers

Spectral Hypergraph Sparsifiers of Nearly Linear Size

Space-Efficient Representations of Graphs

Incompleteness of graph neural networks for points clouds in three dimensions

Towards improving full-length ribosome density prediction by bridging sequence and graph-based representations

Graph Exploration for Effective Multiagent Q-Learning

A Unified Experiment Design Approach for Cyclic and Acyclic Causal Models

Molecular hypergraph neural networks