Ocean acidification | EPFL Graph Search

Ocean acidification is the decrease in the pH of the Earth's ocean. Between 1950 and 2020, the average pH of the ocean surface fell from approximately 8.15 to 8.05. Carbon dioxide emissions from human activities are the primary cause of ocean acidification, with atmospheric carbon dioxide (CO2) levels exceeding 410 ppm (in 2020). CO2 from the atmosphere is absorbed by the oceans. This produces carbonic acid (H2CO3) which dissociates into a bicarbonate ion () and a hydrogen ion (H+). The presence of free hydrogen ions (H+) lowers the pH of the ocean, increasing acidity (this does not mean that seawater is acidic yet; it is still alkaline, with a pH higher than 8). Marine calcifying organisms, such as mollusks and corals, are especially vulnerable because they rely on calcium carbonate to build shells and skeletons. A change in pH by 0.1 represents a 26% increase in hydrogen ion concentration in the world's oceans (the pH scale is logarithmic, so a change of one

Influence of pH on dehalorespiring consortia & first steps in the development of a methodology for acid neutralization in enhanced in situ bioremediation

Nicole Munz

Enhanced in situ bioremediation of chlorinated solvents is, especially in source zone remediation, often limited through the accompanied high acidification of groundwater. This acid built-up originating from the dechlorination itself and fermentation products, such as organic acids, presents a draw-back in the efficiency of dehalorespiring bacteria. It is therefore indispensable to develop and implement appropriate buffering strategies to ensure a constant transformation of toxic chloroethenes to the final non-toxic product ethene. In this study pH tolerance of different dehalorespiring bacteria was tested. The limiting acidic pH varies significantly among the consortia. The consortium SL23b4 (PCE to ethene) grows at all the examined pH (pH 5 to pH 7.5) with a pH optimum between 6 and 7 (depending on the dechlorination step), whereas Maroc 6b (PCE to ethene) was only found to grow at incubation pH of 7, and very slowly at pH 6.5. The consortium 2SO (cis-DCE to ethene) seems to be inhibited at acidic pH (no growth at pH 5 and 5.5) having a pH optimum above neutral pH. In most cases incomplete dechlorination was observed in cultures growing at acidic pH or below the pH optima, accumulating toxic intermediate dechlorination products as a consequence. Additionally, high rates of dechlorination were always accompanied by pH drops up to 1.2 pH units, giving evidence of high acid production. pH had also influence on the community composition. In the consortium SL23b4 a shift from a Dehalococcoides- (pH 6-7.5) to a Sulfurospirillum spp.- (pH5 -5.5) dominated community was observed. Consortium Maroc 6b showed significantly different community compositions due to a pH change of only 0.5 pH units. Dehalococcoides spp. and Dehalobacter spp. were dominating at pH 7 and pH 6.5, respectively. Consortium 2SO is dominated by Dehalococcoides spp. at all pH, although at pH 7 a much higher diversity seems to prevail, with the threefold number of OTUs. Tests on the tolerance of the dehalorespiring consortia for elevated PCE concentration showed similar patterns for the different dechlorination steps, as for pH cultures, and confirmed a generally higher sensitivity towards PCE and pH changes for the last steps of dechlorination. Conclusively, Dehalococcoides spp., the only known genera able to perform complete dechlorination, seem to be highly sensitive to pH and PCE changes. Further, abiotic experiments on silicate mineral dissolution, using forsteritic olivine, were performed to simulate the buffer capacity of the minerals for the acid production during microbial reductive dechlorination. In these experiments, the buffer capacity was insufficient to counterbalance the constant acid titration rate, resulting in a final pH between 3 and 4 (initial pH of 7). The formation of precipitates, such as iron oxide, and the re-precipitation of magnesium were observed in some cases, showing a decrease in magnesium concentrations.

2010

Comparison of two carbon-nitrogen regulatory models calibrated with mesocosm data

Shubham Krishna

Marine phytoplankton can regulate their stoichiometric composition in response to variations in the availability of nutrients, light and the pH of seawater. Varying elemental composition of photoautotrophs affects several important ecological and biogeochemical processes, e.g., primary and export production, nutrient cycling, calcification, and grazing. Here we compare two plankton ecosystem models that consider regulatory mechanisms of cellular carbon and nitrogen, driving the physiological acclimation of photoautotrophs. The Carbon:Nitrogen Regulated Ecosystem Model (CN-REcoM) and the optimality-based model (OBM) differ in their representation of phytoplankton dynamics, i.e. nutrient acquisition, synthesis of chlorophyll a, and growth. All other model compartments (zooplankton, detritus, dissolved inorganic and organic matter) and processes (grazing, aggregation, remineralisation) remain identical in both models. We assess the skills of the two models against data from an ocean acidification mesocosm experiment with three CO2 treatments. Neither model accounts for any carbon dioxide (CO2) effects explicitly. Instead, we assimilate data of the different CO2 treatments separately into the models. Thereby we aim at identifying optimal model parameter values that might correlate with differences in CO2 conditions. For the OBM, optimal parameter estimates of Q(min) (subsistence N:C ratio) and V-C(0) (maximum potential photosynthesis rate of photoautotrophs) turned out to be higher for mesocosms exposed to high CO2 compared to those with low CO2 concentrations. By contrast, a similar correlation is not observed for the CN-REcoM. A possible physiological interpretation of higher estimates of Q(min), and V-C(0) according to the OBM is that phytoplankton may experience environmental stress under more acidic conditions, and hence must invest more energy/resources for maintaining basic cellular functions. Our data assimilation reveals that the parameters of the OBM are better constrained by the data than those of the CN-REcoM. Furthermore, the OBM is better able than CN-REcoM to reproduce data that were not used for parameter optimization.

2019

Regulation of the V-ATPase along the endocytic pathway occurs through reversible subunit association and membrane localization

Françoise Gisou van der Goot Grunberg

The lumen of endosomal organelles becomes increasingly acidic when going from the cell surface to lysosomes. Luminal pH thereby regulates important processes such as the release of internalized ligands from their receptor or the activation of lysosomal enzymes. The main player in endosomal acidification is the vacuolar ATPase (V-ATPase), a multi-subunit transmembrane complex that pumps protons from the cytoplasm to the lumen of organelles, or to the outside of the cell. The active V-ATPase is composed of two multi-subunit domains, the transmembrane V(0) and the cytoplasmic V(1). Here we found that the ratio of membrane associated V(1)/Vo varies along the endocytic pathway, the relative abundance of V(1) being higher on late endosomes than on early endosomes, providing an explanation for the higher acidity of late endosomes. We also found that all membrane-bound V-ATPase subunits were associated with detergent resistant membranes (DRM) isolated from late endosomes, raising the possibility that association with lipid-raft like domains also plays a role in regulating the activity of the proton pump. In support of this, we found that treatment of cells with U18666A, a drug that leads to the accumulation of cholesterol in late endosomes, affected acidification of late endosome. Altogether our findings indicate that the activity of the vATPase in the endocytic pathway is regulated both by reversible association/dissociation and the interaction with specific lipid environments.