Concept

Hierarchical clustering

Related publications (286)

Systematic analysis of low-affinity transcription factor binding site clusters in vitro and in vivo establishes their functional relevance

Sebastian Maerkl, Shiyu Cheng, Ivan Istomin, Maria Lopez Malo, Amir Shahein, Evan James Olson

Binding to binding site clusters has yet to be characterized in depth, and the functional relevance of low-affinity clusters remains uncertain. We characterized transcription factor binding to low-affinity clusters in vitro and found that transcription fac ...

NATURE PORTFOLIO2022

Clustering and Informative Path Planning for 3D Gas Distribution Mapping: Algorithms and Performance Evaluation

Alcherio Martinoli, Chiara Ercolani, Lixuan Tang, Ankita Arun Humne

Chemical gas dispersion can represent a severe threat to human and animal lives, as well as to the environment. Constructing a map of the distribution of gas in a fast and reliable manner is critical to ensure accurate monitoring of at-risk facilities and ...

2022

Evaluating objective measures of impairment to trunk strength and control for cross-country sit skiing

Benedikt Fasel

In Paralympic cross-country sit skiing, athlete classification is performed by an expert panel, so it may be affected by subjectivity. An evidence-based classification is required, in which objective measures of impairment must be identified. The purposes ...

SPRINGER LONDON LTD2021

Sublinear Algorithms for Spectral Graph Clustering

Aidasadat Mousavifar

This thesis focuses on designing spectral tools for graph clustering in sublinear time. With the emergence of big data, many traditional polynomial time, and even linear time algorithms have become prohibitively expensive. Processing modern datasets requir ...

EPFL2021

An instance of colorful k-center consists of points in a metric space that are colored red or blue, along with an integer k and a coverage requirement for each color. The goal is to find the smallest radius rho such that there exist balls of radius rho aro ...

SPRINGER HEIDELBERG2021

This paper traces the plunge and rebound of the taxi market in Shenzhen, China through the COVID-19 lockdown. A four-week taxi GPS trajectory data set is collected in the first quarter of 2020, which covers the period of lockdown and phased reopening in th ...

2021

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We study the problem of explainable clustering in the setting first formalized by Dasgupta, Frost, Moshkovitz, and Rashtchian (ICML 2020). A k-clustering is said to be explainable if it is given by a decision tree where each internal node splits data point ...

2021

Influence of Oxidative Stress on Time-Resolved Oxygen Detection by [Ru(Phen)3]2+ In Vivo and In Vitro

Georges Wagnières, Veronika Huntosova

Detection of tissue and cell oxygenation is of high importance in fundamental biological and in many medical applications, particularly for monitoring dysfunction in the early stages of cancer. Measurements of the luminescence lifetimes of molecular probe ...

2021

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Despite FPGAs rapidly evolving to support the requirements of the most demanding emerging applications, their high static power consumption, concentrated within the routing resources, still presents a major hurdle for low-power applications. Augmenting the ...

2021

Data reduction for mixed integer linear programming in complex energy systems

François Maréchal, Luc Girardin, Julia Granacher, Luise Middelhauve, Natalija Ljubic

The task of optimally designing and scheduling energy systems with a high share of renewable energies is complex and computationally demanding. A widespread method for tackling this task is to apply mixed integer linear programming (MILP). Even though the ...

2021

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