Publications related to Sequence assembly

Bernard Moret, Shachi Shailesh Deshpande

Many important questions in molecular biology, evolution, and biomedicine can be addressed by comparative genomic approaches. One of the basic tasks when comparing genomes is the definition of measures of similarity (or dissimilarity) between two genomes, ...

Mary Ann Liebert2017

Top-down analysis of immunoglobulin G isotypes 1 and 2 with electron transfer dissociation on a high-field Orbitrap mass spectrometer

Yury Tsybin, Luca Fornelli, Daniel Ayoub

The increasing importance of immunoglobulins G (IgGs) as biotherapeutics calls for improved structural characterization methods designed for these large (similar to 150 kDa) macromolecules. Analysis workflows have to be rapid, robust, and require minimal s ...

Elsevier Science Bv2017

Nanoscale topographical control of capillary assembly of nanoparticles

Jürgen Brugger, Olivier Martin, Duncan Thomas Lindsay Alexander, Massimo Mastrangeli, Elmira Shahrabi, Jérémy Butet, Valentin Flauraud, Gabriel David Bernasconi

Predetermined and selective placement of nanoparticles onto large-area substrates with nanometre-scale precision is essential to harness the unique properties of nanoparticle assemblies, in particular for functional optical and electro-optical nanodevices. ...

2017

Next-Generation Sequencing of Aquatic Oligochaetes: Comparison of Experimental Communities

Régis Lionel Vivien

Aquatic oligochaetes are a common group of freshwater benthic invertebrates known to be very sensitive to environmental changes and currently used as bioindicators in some countries. However, more extensive application of oligochaetes for assessing the eco ...

Public Library of Science2016

A privacy-preserving solution for compressed storage and selective retrieval of genomic data

Jean-Pierre Hubaux, Jacques Fellay, Zhi Ming Xu, Erman Ayday, Adam Molyneaux, Zhicong Huang, Huang Lin

In clinical genomics, the continuous evolution of bioinformatic algorithms and sequencing platforms makes it beneficial to store patients' complete aligned genomic data in addition to variant calls relative to a reference sequence. Due to the large size of ...

Cold Spring Harbor Laboratory2016

An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values

Marco Mattavelli, Claudio Paolo Alberti, Ana Angelica Hernandez Lopez

This paper provides the specification and an initial validation of an evaluation framework for the comparison of lossy compressors of genome sequencing quality values. The goal is to define reference data, test sets, tools and metrics that shall be used to ...

Ieee2016

Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856

Tobias Johannes Schmid, Roel Paulus Josephus Bevers

The Hawaiian strain (CB4856) of Caenorhabditis elegans is one of the most divergent from the canonical laboratory strain N2 and has been widely used in developmental, population, and evolutionary studies. To enhance the utility of the strain, we have gener ...

2015

Insight into the evolution and origin of leprosy bacilli from the genome sequence of Mycobacterium lepromatosis

Stewart Cole, Andrej Benjak, Charlotte Avanzi, Philippe Busso, Pushpendra Singh

Mycobacterium lepromatosis is an uncultured human pathogen associated with diffuse lepromatous leprosy and a reactional state known as Lucio's phenomenon. By using deep sequencing with and without DNA enrichment, we obtained the near-complete genome sequen ...

National Academy of Sciences2015

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Sequence assembly

Scanning tunneling microscopy on large bio-molecular systems on surfaces

New Genome Similarity Measures based on Conserved Gene Adjacencies

Top-down analysis of immunoglobulin G isotypes 1 and 2 with electron transfer dissociation on a high-field Orbitrap mass spectrometer

Nanoscale topographical control of capillary assembly of nanoparticles

Integrating Gene Synthesis and MITOMI for Rapid Protein Engineering

Next-Generation Sequencing of Aquatic Oligochaetes: Comparison of Experimental Communities

A privacy-preserving solution for compressed storage and selective retrieval of genomic data

An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values

Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856

Insight into the evolution and origin of leprosy bacilli from the genome sequence of Mycobacterium lepromatosis

Graph Chatbot

Chat with Graph Search

New Genome Similarity Measures based on Conserved Gene Adjacencies

A privacy-preserving solution for compressed storage and selective retrieval of genomic data

Scanning tunneling microscopy on large bio-molecular systems on surfaces

An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values

Top-down analysis of immunoglobulin G isotypes 1 and 2 with electron transfer dissociation on a high-field Orbitrap mass spectrometer

Nanoscale topographical control of capillary assembly of nanoparticles

Integrating Gene Synthesis and MITOMI for Rapid Protein Engineering

Insight into the evolution and origin of leprosy bacilli from the genome sequence of Mycobacterium lepromatosis

Next-Generation Sequencing of Aquatic Oligochaetes: Comparison of Experimental Communities

Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856