Sequence Alignment: Implementation and Submission

Needleman-Wunsch Algorithm: Sequence Alignment

Covers the Needleman-Wunsch algorithm for optimal protein sequence alignment using dynamic programming and scoring methods.

Understanding Generative Models of Protein Sequences

Explores a unified framework for understanding and evaluating generative sequence models of DNA/RNA or Protein, covering topics like coevolution, conservation, and different models such as GREMLIN and BERT.

Protein Residue Coevolution Analysis

Delves into analyzing residue coevolution in protein families to capture native contacts and predict spatial proximity and protein interactions.

Genetic Distance Calculation

Explores DNA sequence alignment, genetic distance calculation, and the impact of incorrect alignments during meiosis.

Protein Structure Prediction

Delves into predicting protein structure through amino acid contact analysis and advanced computational methods.