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Lecture
Protein Design: Computational Methods
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Protein Co-evolutionary Analysis
Explores protein co-evolutionary analysis, covering protein functions, folding, correlations, DCA, and structure prediction tools like AlphaFold 2.
Protein Folding: Structure and Interactions
Explores protein folding, amino acids, RNA translation, and attractive forces, emphasizing the importance of native state conformation and compact structures.
Protein Folding Dynamics
Explores protein folding dynamics, chaperones, ATP hydrolysis, and DNA folding intricacies within the nucleus.
Energy Minimization in Biological Systems: Equilibrium Models
Covers energy minimization models in biological systems, focusing on equilibrium and the roles of entropy and hydrophobicity.
Plasma Membrane Structure and Proteins
Covers plasma membrane structure, protein composition, fatty acid variations, protein folding, and amino acid properties.
Protein Structure and Function: Folding and Degradation
Covers protein folding, maturation, degradation, and the implications of misfolding in neurodegenerative diseases.
Computational Quantum Physics
Covers path-integral ground state methods and Monte Carlo simulations in computational quantum physics.
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Molecular Dynamics Simulation: Trp-cage Miniprotein
Covers MD simulation of the Trp-cage miniprotein, focusing on implicit solvent modeling and practical analysis of simulation results.
Engineering Proteins: Structure, Function, and Applications
Covers the structure, function, and engineering of proteins, emphasizing their biological significance and applications in biotechnology.