James Gonzalo King

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Thalamic control of sensory processing and spindles in a biophysical somatosensory thalamoreticular circuit model of wakefulness and sleep

Matthias Wolf, Henry Markram, Sean Lewis Hill, Michael Reimann, Werner Alfons Hilda Van Geit, Rodrigo de Campos Perin, James Gonzalo King, Marwan Muhammad Ahmed Abdellah, Pramod Shivaji Kumbhar, Ying Shi, Jean-Denis Georges Emile Courcol, Rajnish Ranjan, András Ecker, Michael Emiel Gevaert, Cyrille Pierre Henri Favreau, Oren Amsalem, Mohameth François Sy, Grigori Chevtchenko, Genrich Ivaska, Mustafa Anil Tuncel, Samuel Claude Kerrien, Vignayanandam Ravindernath Muddapu, Fabien Petitjean, Polina Litvak, Adrien Christian Fleury, Christian O'Reilly, Elisabetta Iavarone, Joni Henrikki Herttuainen, Anna-Kristin Kaufmann, Ioannis Magkanaris, Nadir Roman Guerrero, Jayakrishnan Harikrishnavilas Raveendran Nair, Benoît Jean-Albert Coste, Liviu Soltuzu, Alexander Désiré Ulbrich, Marine Laure Bertschy, Patrycja Lurie

2023

Long-term plasticity induces sparse and specific synaptic changes in a biophysically detailed cortical model

Eilif Benjamin Muller, Michael Reimann, James Gonzalo King, Marwan Muhammad Ahmed Abdellah, Pramod Shivaji Kumbhar, András Ecker, Sirio Bolaños Puchet, James Bryden Isbister, Daniela Egas Santander, Jorge Blanco Alonso, Giuseppe Chindemi, Ioannis Magkanaris

Synaptic plasticity underlies the brain’s ability to learn and adapt. This process is often studied in small groups of neurons in vitro or indirectly through its effects on behavior in vivo. Due to the limitations of available experimental techniques, inve ...

2023

Community-based reconstruction and simulation of a full-scale model of region CA1 of rat hippocampus.

Henry Markram, Felix Schürmann, Eilif Benjamin Muller, Srikanth Ramaswamy, Michael Reimann, Werner Alfons Hilda Van Geit, James Gonzalo King, Marwan Muhammad Ahmed Abdellah, Lida Kanari, Pramod Shivaji Kumbhar, Alexis Arnaudon, Ying Shi, Jean-Denis Georges Emile Courcol, Armando Romani, András Ecker, Michael Emiel Gevaert, Michele Migliore, Cyrille Pierre Henri Favreau, Vishal Sood, Cristina Colangelo, Mohameth François Sy, Judit Planas Carbonell, Szabolcs Kali, Genrich Ivaska, Carmen Alina Lupascu, Elvis Boci, Alberto Antonietti, Fabien Petitjean, Julian Martin Budd, Elisabetta Giacalone, Davide Bella, Mustafa Kerem Kurban, Pranav Rai, Juan Bautista Hernando Vieites, Huanxiang Lu, Liesbeth Maria L Vanherpe, Joni Henrikki Herttuainen, Rosanna Migliore, Anna-Kristin Kaufmann, Juan Luis Riquelme Roman, Sàra Sàray, Audrey Mercer, Thomas Brice Delemontex, Nadir Roman Guerrero

The CA1 region of the hippocampus is one of the most studied regions of the rodent brain, thought to play an important role in cognitive functions such as memory and spatial navigation. Despite a wealth of experimental data on its structure and function, i ...

2023

Modeling and simulation of neocortical micro- and mesocircuitry. Part II: Physiology and experimentation

Matthias Wolf, Henry Markram, Felix Schürmann, Eilif Benjamin Muller, Srikanth Ramaswamy, Michael Reimann, Daniel Keller, Werner Alfons Hilda Van Geit, James Gonzalo King, Pramod Shivaji Kumbhar, Alexis Arnaudon, Jean-Denis Georges Emile Courcol, Rajnish Ranjan, Armando Romani, András Ecker, Michael Emiel Gevaert, Vishal Sood, Sirio Bolaños Puchet, James Bryden Isbister, Judit Planas Carbonell, Daniela Egas Santander, Maria Reva, Genrich Ivaska, Natali Barros Zulaica, Mustafa Anil Tuncel, Christoph Pokorny, Elvis Boci, Jorge Blanco Alonso, Aleksandra Zuzanna Teska, Darshan Mandge, Polina Litvak, Gianluca Ficarelli, Weina Ji, Giuseppe Chindemi, Christian Andreas Rössert, Omar Awile, Joni Henrikki Herttuainen, Samuel Lieven D. Lapere, Thomas Brice Delemontex, Tanguy Pierre Louis Damart, Alexander Dietz

In recent years, large-scale computational models of the cortex have emerged as a powerful way to study the multi-scale mechanisms of neural processing. However, due to computational costs and difficulty of parameterization, detailed biophysical reconstruc ...

2023

STEPS 4.0: Fast and memory-efficient molecular simulations of neurons at the nanoscale

James Gonzalo King, Pramod Shivaji Kumbhar, Iain Hepburn, Weiliang Chen, Tristan Mathieu Carel, Alessandro Cattabiani, Nicola Cantarutti, Omar Awile, Christos Kotsalos, Samuel Marie A Melchior, Baudouin Paul Michel Maria Joseph Del Marmol, Giacomo Castiglioni

Recent advances in computational neuroscience have demonstrated the usefulness and importance of stochastic, spatial reaction-diffusion simulations. However, ever increasing model complexity renders traditional serial solvers, as well as naive parallel imp ...

FRONTIERS MEDIA SA2022

High synaptic threshold for dendritic NMDA spike generation in human layer 2/3 pyramidal neurons

James Gonzalo King, Suraj Honnuraiah

Neurons receive synaptic input primarily onto their dendrites. While we know much about the electrical properties of dendrites in rodents, we have only just started to describe their properties in the human brain. Here, we investigate the capacity of human ...

2022

Modeling and simulation of rat non-barrel somatosensory cortex. Part I: Modeling anatomy

Matthias Wolf, Henry Markram, Kathryn Hess Bellwald, Felix Schürmann, Eilif Benjamin Muller, Srikanth Ramaswamy, Michael Reimann, Daniel Keller, Werner Alfons Hilda Van Geit, James Gonzalo King, Lida Kanari, Pramod Shivaji Kumbhar, Alexis Arnaudon, Ying Shi, Jean-Denis Georges Emile Courcol, Armando Romani, András Ecker, Michael Emiel Gevaert, Cyrille Pierre Henri Favreau, Vishal Sood, Sirio Bolaños Puchet, James Bryden Isbister, Judit Planas Carbonell, Daniela Egas Santander, Christoph Pokorny, Adrien Michel Achille Devresse, Gianluca Ficarelli, Hugo Thabo Dictus, Janis Lazovskis, Juan Bautista Hernando Vieites, Huanxiang Lu, Liesbeth Maria L Vanherpe, Ran Levi, Joni Henrikki Herttuainen, Samuel Lieven D. Lapere, Juan Luis Riquelme Roman, Thomas Brice Delemontex, Nicolas René Jean Ninin, Alexander Dietz, Benoît Jean-Albert Coste

The function of the neocortex is fundamentally determined by its repeating microcircuit motif, but also by its rich, hierarchical, interregional structure with a highly specific laminar architecture. The last decade has seen the emergence of extensive new ...

2022

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Domain-specific languages (DSLs) play an increasingly important role in the generation of high performing software. They allow the user to exploit domain knowledge for the generation of more efficient code on target architectures. Here, we describe a new c ...

Springer2020

Dense Computer Replica of Cortical Microcircuits Unravels Cellular Underpinnings of Auditory Surprise Response

Henry Markram, Eilif Benjamin Muller, Srikanth Ramaswamy, Michael Reimann, James Gonzalo King, Oren Amsalem, Idan Segev

The nervous system is notorious for its strong response evoked by a surprising sensory input, but the biophysical and anatomical underpinnings of this phenomenon are only partially understood. Here we utilized in-silico experiments of a biologically-detail ...

2020

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The NEURON simulator has been developed over the past three decades and is widely used by neuroscientists to model the electrical activity of neuronal networks. Large network simulation projects using NEURON have supercomputer allocations that individually ...

2019