Publications by Huanxiang Lu | EPFL Graph Search

Blue Brain Nexus: An open, secure, scalable system for knowledge graph management and data-driven science

Henry Markram, Sean Lewis Hill, Mohameth François Sy, Samuel Claude Kerrien, Carolina Johanna Elisabeth Lindqvist, Alejandra Garcia Rojas Martinez, Huanxiang Lu, Anna-Kristin Kaufmann, Jonathan Raël Lurie, Henry Genet, Pierre-Alexandre Fonta, Alexander Désiré Ulbrich, Michaël Fernand Paul Dupont, Silvia Rosario Jimenez Tejeda, Bogdan Roman, Ian Lavriushev, Didac Montero Mendez, Wojciech Adam Wajerowicz, Kenneth William Pirman, Julien Antonin Machon, Dhanesh Neela Mana, Natalia Stafeeva

Modern data-driven science often consists of iterative cycles of data discovery, acquisition, preparation, analysis, model building and validation leading to knowledge discovery as well as dissemination at scale. The unique challenges of building and simul ...

2023

Community-based reconstruction and simulation of a full-scale model of region CA1 of rat hippocampus.

Henry Markram, Felix Schürmann, Eilif Benjamin Muller, Srikanth Ramaswamy, Michael Reimann, Werner Alfons Hilda Van Geit, James Gonzalo King, Marwan Muhammad Ahmed Abdellah, Lida Kanari, Pramod Shivaji Kumbhar, Alexis Arnaudon, Ying Shi, Jean-Denis Georges Emile Courcol, Armando Romani, András Ecker, Michael Emiel Gevaert, Michele Migliore, Cyrille Pierre Henri Favreau, Vishal Sood, Cristina Colangelo, Mohameth François Sy, Judit Planas Carbonell, Szabolcs Kali, Genrich Ivaska, Carmen Alina Lupascu, Elvis Boci, Alberto Antonietti, Fabien Petitjean, Julian Martin Budd, Elisabetta Giacalone, Davide Bella, Mustafa Kerem Kurban, Pranav Rai, Juan Bautista Hernando Vieites, Huanxiang Lu, Liesbeth Maria L Vanherpe, Joni Henrikki Herttuainen, Rosanna Migliore, Anna-Kristin Kaufmann, Juan Luis Riquelme Roman, Sàra Sàray, Audrey Mercer, Thomas Brice Delemontex, Nadir Roman Guerrero

The CA1 region of the hippocampus is one of the most studied regions of the rodent brain, thought to play an important role in cognitive functions such as memory and spatial navigation. Despite a wealth of experimental data on its structure and function, i ...

2023

Modeling and simulation of rat non-barrel somatosensory cortex. Part I: Modeling anatomy

Matthias Wolf, Henry Markram, Kathryn Hess Bellwald, Felix Schürmann, Eilif Benjamin Muller, Srikanth Ramaswamy, Michael Reimann, Daniel Keller, Werner Alfons Hilda Van Geit, James Gonzalo King, Lida Kanari, Pramod Shivaji Kumbhar, Alexis Arnaudon, Ying Shi, Jean-Denis Georges Emile Courcol, Armando Romani, András Ecker, Michael Emiel Gevaert, Cyrille Pierre Henri Favreau, Vishal Sood, Sirio Bolaños Puchet, James Bryden Isbister, Judit Planas Carbonell, Daniela Egas Santander, Christoph Pokorny, Adrien Michel Achille Devresse, Gianluca Ficarelli, Hugo Thabo Dictus, Janis Lazovskis, Juan Bautista Hernando Vieites, Huanxiang Lu, Liesbeth Maria L Vanherpe, Ran Levi, Joni Henrikki Herttuainen, Samuel Lieven D. Lapere, Juan Luis Riquelme Roman, Thomas Brice Delemontex, Nicolas René Jean Ninin, Alexander Dietz, Benoît Jean-Albert Coste

The function of the neocortex is fundamentally determined by its repeating microcircuit motif, but also by its rich, hierarchical, interregional structure with a highly specific laminar architecture. The last decade has seen the emergence of extensive new ...

2022

Supervised Learning With Perceptual Similarity for Multimodal Gene Expression Registration of a Mouse Brain Atlas

Henry Markram, Felix Schürmann, Daniel Keller, Huanxiang Lu, Francesco Casalegno, Csaba Erö

The acquisition of high quality maps of gene expression in the rodent brain is of fundamental importance to the neuroscience community. The generation of such datasets relies on registering individual gene expression images to a reference volume, a task en ...

FRONTIERS MEDIA SA2021

A null model of the mouse whole-neocortex micro-connectome

Henry Markram, Eilif Benjamin Muller, Michael Reimann, Ying Shi, Huanxiang Lu

In connectomics, the study of the network structure of connected neurons, great advances are being made on two different scales: that of macro- and meso-scale connectomics, studying the connectivity between populations of neurons, and that of micro-scale c ...

2019

Genetic Polymorphism Associated Prefrontal Glutathione and Its Coupling With Brain Glutamate and Peripheral Redox Status in Early Psychosis

Rolf Gruetter, Lijing Xin, Kim Do, Benoît Schaller, Huanxiang Lu

BACKGROUND: Oxidative stress and glutathione (GSH) metabolism dysregulation has been implicated in the pathophysiology of schizophrenia. GAG-trinucleotide repeat (TNR) polymorphisms in the glutamate-cysteine ligase catalytic gene (GCLC), the rate-limiting ...

Oxford University Press2016

Proton T(1) relaxation times of metabolites in human occipital white and gray matter at 7 T

Rolf Gruetter, Lijing Xin, Benoît Schaller, Huanxiang Lu

Proton T(1) relaxation times of metabolites in the human brain have not previously been published at 7 T. In this study, T(1) values of CH(3) and CH(2) group of N-acetylaspartate and total creatine as well as nine other brain metabolites were measured in o ...

Wiley-Blackwell2013

Huanxiang Lu