Publications by Agata Justyna Mosinska

Tracing in 2D to reduce the annotation effort for 3D deep delineation of linear structures

Pascal Fua, Mathieu Salzmann, Agata Justyna Mosinska, Mateusz Kozinski

The difficulty of obtaining annotations to build training databases still slows down the adoption of recent deep learning approaches for biomedical image analysis. In this paper, we show that we can train a Deep Net to perform 3D volumetric delineation giv ...

2020

Joint Segmentation and Path Classification of Curvilinear Structures

Pascal Fua, Agata Justyna Mosinska, Mateusz Kozinski

Detection of curvilinear structures in images has long been of interest. One of the most challenging aspects of this problem is inferring the graph representation of the curvilinear network. Most existing delineation approaches first perform binary segment ...

2020

Learning Approach to Delineation of Curvilinear Structures in 2D and 3D Images

Agata Justyna Mosinska

Detection of curvilinear structures has long been of interest due to its wide range of applications. Large amounts of imaging data could be readily used in many fields, but it is practically not possible to analyze them manually. Hence, the need for automa ...

EPFL2019

Beyond the Pixel-Wise Loss for Topology-Aware Delineation

Pascal Fua, Pablo Marquez Neila, Agata Justyna Mosinska, Mateusz Kozinski

Delineation of curvilinear structures is an important problem in Computer Vision with multiple practical applications. With the advent of Deep Learning, many current approaches on automatic delineation have focused on finding more powerful deep architectur ...

2018

Learning to Segment 3D Linear Structures Using Only 2D Annotations

Pascal Fua, Mathieu Salzmann, Agata Justyna Mosinska, Mateusz Kozinski

We propose a loss function for training a Deep Neural Network (DNN) to segment volumetric data, that accommodates ground truth annotations of 2D projections of the training volumes, instead of annotations of the 3D volumes themselves. In consequence, we si ...

SPRINGER INTERNATIONAL PUBLISHING AG2018

Reconstructing Evolving Tree Structures in Time Lapse Sequences by Enforcing Time-Consistency

Pascal Fua, Engin Türetken, Raphael Sznitman, Jan Kybic, Agata Justyna Mosinska, Przemyslaw Rafal Glowacki, Miguel Amável Dos Santos Pinheiro, Daniel Lebrecht

We propose a novel approach to reconstructing curvilinear tree structures evolving over time, such as road networks in 2D aerial images or neural structures in 3D microscopy stacks acquired in vivo. To enforce temporal consistency, we simultaneously proces ...

2017

Active Learning and Proofreading for Delineation of Curvilinear Structures

Pascal Fua, Agata Justyna Mosinska, Jakub Tarnawski

Many state-of-the-art delineation methods rely on supervised machine learning algorithms. As a result, they require manually annotated training data, which is tedious to obtain. Furthermore, even minor classification errors may significantly affect the top ...

2017

Active Learning for Delineation of Curvilinear Structures

Pascal Fua, Raphael Sznitman, Agata Justyna Mosinska, Przemyslaw Rafal Glowacki

2016