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Generating Realistic In Silico Gene Networks for Performance Assessment of Reverse Engineering Methods

Related publications (41)

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Alignment and Assembly

Lyudmila Yartseva

Over recent years, many large network datasets become available, giving rise to novel and valuable applications of data mining and machine learning techniques. These datasets include social networks, the structure of the Internet, and protein-interaction n ...

EPFL2017

NEMo: An Evolutionary Model With Modularity for PPI Networks

Bernard Moret, Xiuwei Zhang, Min Ye, Qijia Jiang, Gabriela Clara Racz

Modeling the evolution of biological networks is a major challenge. Biological networks are usually represented as graphs; evolutionary events not only include addition and removal of vertices and edges but also duplication of vertices and their associated ...

IEEE Press2017

Network Alignment: Theory, Algorithms, and Applications

Ehsan Kazemi

Networks are central in the modeling and analysis of many large-scale human and technical systems, and they have applications in diverse fields such as computer science, biology, social sciences, and economics. Recently, network mining has been an active a ...

EPFL2016

NEMo: An Evolutionary Model with Modularity for PPI Networks

Bernard Moret, Xiuwei Zhang, Min Ye, Qijia Jiang, Gabriela Clara Racz

Modelling the evolution of biological networks is a major challenge. Biological networks are usually represented as graphs; evolutionary events include addition and removal of vertices and edges, but also duplication of vertices and their associated edges. ...

Springer Int Publishing Ag2016

Privacy and Dynamics of Social Networks

Pedram Pedarsani

Over the past decade, investigations in different fields have focused on studying and understanding real networks, ranging from biological to social to technological. These networks, called complex networks, exhibit common topological features, such as a h ...

EPFL2013

Urban street networks, a comparative analysis of ten European cities

Emanuele Strano, Alessio Vincenzo Cardillo

We compare the structural properties of the street networks of ten different European cities using their primal representation. We investigate the properties of the geometry of the networks and a set of centrality measures highlighting differences and simi ...

Pion Ltd2013

Tracking Individuals Shows Spatial Fidelity Is a Key Regulator of Ant Social Organization

Alessandro Crespi

Ants live in organized societies with a marked division of labor among workers, but little is known about how this division of labor is generated. We used a tracking system to continuously monitor individually tagged workers in six colonies of the ant Camp ...

Amer Assoc Advancement Science2013

Privacy and Dynamics of Social Networks (PhD Thesis: pre-print)

Pedram Pedarsani

2012

Locating the Source of Diffusion in Large-Scale Networks

Martin Vetterli, Patrick Thiran, Pedro Pereira Correia Pinto

How can we localize the source of diffusion in a complex network? Due to the tremendous size of many real networks---such as the Internet or the human social graph---it is usually infeasible to observe the state of all nodes in a network. We show that it i ...

American Physical Society2012

Automatic Skill Acquisition in Reinforcement Learning Using Graph Centrality Measures

Martin Hasler, Ali Ajdari Rad, Alireza Khadivi

Mechanisms on automatic discovery of macro actions or skills in reinforcement learning methods are mainly focused on subgoal discovery methods. Among the proposed algorithms, those based on graph centrality measures demonstrate a high performance gain. In ...

2012