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A Rate-based Prefiltering Approach to BLAST Acceleration

Related publications (37)

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Pronto: High Availability for Standard Off-the-shelf Databases

Fernando Pedone

Enterprise applications typically store their state in databases. If a database fails, the application is unavailable while the database recovers. Database recovery is time consuming because it involves replaying the persistent transaction log. To isolate ...

2004

Conflict-Aware Scheduling for Dynamic Content Applications

Willy Zwaenepoel

We present a new lazy replication technique, suitable for scaling the back-end database of a dynamic content site using a cluster of commodity computers. Our technique, called conflict-aware scheduling, provides both throughput scaling and 1-copy serializa ...

2003

Using Code Transformation for Consistent and Transparent Caching of Dynamic Web Content

Willy Zwaenepoel, Sumit Mittal

We present a consistent and transparent caching system for dynamic web pages produced by a server-side application using a back-end database. Cached pages always reflect current database values. No intervention from the programmer is necessary to implement ...

2003

PROSITE: a documented database using patterns and profiles as motif descriptors

Philipp Bucher, Amos Bairoch

Among the various databases dedicated to the identification of protein families and domains, PROSITE is the first one created and has continuously evolved since. PROSITE currently consists of a large collection of biologically meaningful motifs that are de ...

2002

Group communications and database replication

Matthias Wiesmann

Databases are an important part of today's IT infrastructure: both companies and state institutions rely on database systems to store most of their important data. As we are more and more dependent on database systems, securing this key facility is now a p ...

EPFL2002

On Spatial Database Integration

Stefano Spaccapietra, Christine Parent

This paper investigates the problems that arise when application requirements command that autonomous spatial databases be integrated into a federated one. The paper focuses on the most critical issues raised by the integration of databases of different sc ...

1998

The Physics of an Ignited Tokamak

Francis Troyon

A next step device which can demonstrate long burn with a high probability of success is possible, without speculating on the accumulation of favorable effects and ignoring the other ones. From the data base available today this appears possible only with ...

1991