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Global and stage specific patterns of krüppel-associated-box zinc finger protein gene expression in murine early embryonic cells

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Evolutionally dynamic control of LINE-1 elements in embryonic stem cells

Natali Pennese

Mobile elements are important evolutionary forces that challenge genomic integrity. Long interspersed element-1 (L1, also known as LINE-1) is the only autonomous transposon still active in the human genome. It displays an unusual pattern of evolution, with ...

EPFL2015

Endogenous retroelements (EREs) are essential motors of evolution yet require careful control to prevent genomic catastrophes, notably during the vulnerable phases of epigenetic reprogramming that occur immediately after fertilization and in germ cells. Ac ...

Landes Bioscience2015

Serum-to-2i interconversion of mouse embryonic stem cells (mESCs) is a valuable in vitro model for early embryonic development. To assess whether 3D chromatin organization changes during this transition, we established Capture Hi-C with target-sequence enr ...

Cell Press2015

Visualizing the HoxD Gene Cluster at the Nanoscale Level

Denis Duboule, Suliana Manley, Aleksandr Benke, Pierre Raymond Fabre

Transcription of HoxD cluster genes in limbs is coordinated by two topologically associating domains (TADs), neighboring the cluster and containing various enhancers. Here, we use a combination of microscopy approaches and chromosome conformation capture t ...

2015

Loss of transcriptional control over endogenous retroelements during reprogramming to pluripotency

Didier Trono, Priscilla Turelli, Evaristo Jose Planet Letschert, Bastien Mangeat, Marc Samuel Friedli, Adamantia Kapopoulou, Gabriela Ecco, Helen Mary Rowe, Benjamin Rauwel, Carmen Maria Unzu Ezquerro

Endogenous retroelements (EREs) account for about half of the mouse or human genome, and their potential as insertional mutagens and transcriptional perturbators is suppressed by early embryonic epigenetic silencing. Here, we asked how ERE control is maint ...

Cold Spring Harbor Lab Press, Publications Dept2014

Evolutionally dynamic L1 regulation in embryonic stem cells

Didier Trono, Priscilla Turelli, Julien Léonard Duc, Marc Samuel Friedli, Adamantia Kapopoulou, Gabriela Ecco, Andrea Coluccio, Suk Min Jang

Cold Spring Harbor Lab Press, Publications Dept2014

Biomolecular signaling is of utmost importance in governing many biological processes such as the patterning of the developing embryo where biomolecules regulate key cell-fate decisions. In vivo, these factors are presented in a spatiotemporally tightly co ...

Nature Publishing Group2014

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Reverse transcription-derived sequences account for at least half of the human genome. Although these retroelements are formidable motors of evolution, they can occasionally cause disease, and accordingly are inactivated during early embryogenesis through ...

Cold Spring Harbor Lab Press, Publications Dept2014

A Genetic Approach to the Recruitment of PRC2 at the HoxD Locus

Denis Duboule, Fabrice Daniel Darbellay, Patrick Schorderet, Nicolas Lonfat

Polycomb group (PcG) proteins are essential for the repression of key factors during early development. In Drosophila, the polycomb repressive complexes (PRC) associate with defined polycomb response DNA elements (PREs). In mammals, however, the mechanisms ...

Public Library of Science2013

Polycomb Recruitment and Targeting in Mammals

Patrick Schorderet

Polycomb- (PcG) and trithorax (trxG) group proteins are essential components in the regulation of multiple developmental regulators. In particular, during early stages, they act as chromatin modifiers in such a way as to set and maintain the transcriptiona ...

EPFL2013