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A Domain-Adaptive Two-Stream U-Net for Electron Microscopy Image Segmentation

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Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images. Existing cell segmentation methods are often tailored to specific modalities or require manual interventions to specify hyper-parameters in different experimen ...

Nature Portfolio2024

3D reconstruction of curvilinear one-dimensional objects viewed in transmission electron microscopy

Gulnaz Ganeeva

To obtain a more complete understanding of material microstructure at the nanoscale and to gain profound insights into their properties, there is a growing need for more efficient and precise methods that can streamline the process of 3D imaging using a tr ...

EPFL2023

Large training datasets have played a vital role in the success of modern deep learning methods in computer vision. But, obtaining sufficient amount of training data is challenging, specially when annotating volumetric images. This is because fully annotat ...

EPFL2022

In this study, we present the deep learning image segmentation model for drone-based grain size analysis of gravel bars called GALET. The objectives are to quantify the performance of the code and to test its applicability in river research and management. ...

International Association for Hydro-Environment Engineering and Research (IAHR)2022

Unsupervised Visual Entity Abstraction towards 2D and 3D Compositional Models

Beril Besbinar

Object-centric learning has gained significant attention over the last years as it can serve as a powerful tool to analyze complex scenes as a composition of simpler entities. Well-established tasks in computer vision, such as object detection or instance ...

EPFL2022

Optical flow is a method aimed at predicting the movement velocity of any pixel in the image and is used in medicine and biology to estimate flow of particles in organs or organelles. However, a precise optical flow measurement requires images taken at hig ...

IEEE2021

inspectors that walk over the track and check the defects on the rail surface, fasteners and sleepers. In the case of concrete sleepers, rail inspectors classify defects according to their size and occurrence over 20 sleepers. The manual inspection is erro ...

2021

One of the main limitations of artificial intelligence today is its inability to adapt to unforeseen circumstances. Machine Learning (ML), due to its data-driven nature, is particularly susceptible to this. ML relies on observations in order to learn impli ...

EPFL2020

This report presents the software tools that will be available online to help users accurately segment ultra-thin sections of brain tissue in a large image to determine the section’s coordinates. In order to predict these coordinates, the goal was to use a ...

2019

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We present an Unsupervised Domain Adaptation strategy to compensate for domain shifts on Electron Microscopy volumes. Our method aggregates visual correspondences—motifs that are visually similar across different acquisitions—to infer changes on the parame ...

2019