Structural genomicsStructural genomics seeks to describe the 3-dimensional structure of every protein encoded by a given genome. This genome-based approach allows for a high-throughput method of structure determination by a combination of experimental and modeling approaches. The principal difference between structural genomics and traditional structural prediction is that structural genomics attempts to determine the structure of every protein encoded by the genome, rather than focusing on one particular protein.
Concurrent Versions SystemConcurrent Versions System (CVS, also known as the Concurrent Versioning System) is a revision control system originally developed by Dick Grune in July 1986. CVS operates as a front end to RCS, an earlier system which operates on single files. It expands upon RCS by adding support for repository-level change tracking, and a client-server model. Released under the terms of the GNU General Public License, CVS is free software. CVS operates as a front end to Revision Control System (RCS), an older version control system that manages individual files but not whole projects.
Particle numberIn thermodynamics, the particle number (symbol N) of a thermodynamic system is the number of constituent particles in that system. The particle number is a fundamental thermodynamic property which is conjugate to the chemical potential. Unlike most physical quantities, the particle number is a dimensionless quantity, specifically a countable quantity. It is an extensive property, as it is directly proportional to the size of the system under consideration and thus meaningful only for closed systems.
Vacuum energyVacuum energy is an underlying background energy that exists in space throughout the entire Universe. The vacuum energy is a special case of zero-point energy that relates to the quantum vacuum. The effects of vacuum energy can be experimentally observed in various phenomena such as spontaneous emission, the Casimir effect and the Lamb shift, and are thought to influence the behavior of the Universe on cosmological scales. Using the upper limit of the cosmological constant, the vacuum energy of free space has been estimated to be 10−9 joules (10−2 ergs), or ~5 GeV per cubic meter.
Elementary particleIn particle physics, an elementary particle or fundamental particle is a subatomic particle that is not composed of other particles. The Standard Model presently recognizes seventeen distinct particles, twelve fermions and five bosons. As a consequence of flavor and color combinations and antimatter, the fermions and bosons are known to have 48 and 13 variations, respectively. Among the 61 elementary particles embraced by the Standard Model number electrons and other leptons, quarks, and the fundamental bosons.
Particle decayIn particle physics, particle decay is the spontaneous process of one unstable subatomic particle transforming into multiple other particles. The particles created in this process (the final state) must each be less massive than the original, although the total invariant mass of the system must be conserved. A particle is unstable if there is at least one allowed final state that it can decay into. Unstable particles will often have multiple ways of decaying, each with its own associated probability.
IonizationIonization (or ionisation) is the process by which an atom or a molecule acquires a negative or positive charge by gaining or losing electrons, often in conjunction with other chemical changes. The resulting electrically charged atom or molecule is called an ion. Ionization can result from the loss of an electron after collisions with subatomic particles, collisions with other atoms, molecules and ions, or through the interaction with electromagnetic radiation.
Structural alignmentStructural alignment attempts to establish homology between two or more polymer structures based on their shape and three-dimensional conformation. This process is usually applied to protein tertiary structures but can also be used for large RNA molecules. In contrast to simple structural superposition, where at least some equivalent residues of the two structures are known, structural alignment requires no a priori knowledge of equivalent positions.
Nonlinear dimensionality reductionNonlinear dimensionality reduction, also known as manifold learning, refers to various related techniques that aim to project high-dimensional data onto lower-dimensional latent manifolds, with the goal of either visualizing the data in the low-dimensional space, or learning the mapping (either from the high-dimensional space to the low-dimensional embedding or vice versa) itself. The techniques described below can be understood as generalizations of linear decomposition methods used for dimensionality reduction, such as singular value decomposition and principal component analysis.
Distributed version controlIn software development, distributed version control (also known as distributed revision control) is a form of version control in which the complete codebase, including its full history, is mirrored on every developer's computer. Compared to centralized version control, this enables automatic management branching and merging, speeds up most operations (except pushing and pulling), improves the ability to work offline, and does not rely on a single location for backups.
