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An Open-Source Whole Slide Image Registration Workflow at Cellular Precision Using Fiji, QuPath and Elastix

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Neurofeedback based on real-time functional magnetic resonance imaging (rt-fMRI) is a novel and rapidly developing research field. It allows for training of voluntary control over localized brain activity and connectivity and has demonstrated promising cli ...

Elsevier2017

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QUANTUM ESPRESSO is an integrated suite of open-source computer codes for quantum simulations of materials using state-of-the-art electronic-structure techniques, based on density-functional theory, density-functional perturbation theory, and many-body per ...

Iop Publishing Ltd2017

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Understanding the biological underpinnings of movement and action requires the development of tools for quantitative measurements of animal behavior. Drosophila melanogaster provides an ideal model for developing such tools: the fly has unparalleled geneti ...

2017

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This Technical Report provides the deployment and evaluation guide of the IX dataplane operating system, as of its first open-source release on May 27, 2016. To facilitate the reproduction of our results, we include in this report the precise steps needed ...

2016

Research in the area of automatic speaker verification (ASV) has advanced enough for the industry to start using ASV systems in practical applications. However, as it was also shown for fingerprints, face, and other verification systems, ASV systems are hi ...

Idiap2016

Ideal adsorbed solution theory (LAST) is a widely-used thermodynamic framework to readily predict mixed-gas adsorption isotherms from a set of pure-component adsorption isotherms. We present an open-source, user-friendly Python package, pyIAST, to perform ...

Elsevier2016

Peer reviewing is one of the core processes of science. While the typical blind system helps to improve original submissions, there are opportunities for academic publishing to learn from open source practices (commits, bug reports, feature requests, docum ...

2014

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Science instructors from a wide range of disciplines agree that hands-on laboratory components of courses are pedagogically necessary (Freedman, 1997). However, certain shortcomings of current laboratory exercises have been pointed out by several authors ( ...

The MIT Press2014

BactImAS: a platform for processing and analysis of bacterial time-lapse microscopy movies

Zeljka Maglica

Background: The software available to date for analyzing image sequences from time-lapse microscopy works only for certain bacteria and under limited conditions. These programs, mostly MATLAB-based, fail for microbes with irregular shape, indistinct cell d ...

Biomed Central Ltd2014

An Open-Source Multiscale Framework for the Simulation of Nanoscale Devices

Nicola Marzari

We present a general simulation framework for assessing the performance of nanoscale devices that combines several powerful and widely used open-source codes, and based on minimal but chemically accurate tight-binding Hamiltonians obtained from density-fun ...

Ieee-Inst Electrical Electronics Engineers Inc2014