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An Open-Source Whole Slide Image Registration Workflow at Cellular Precision Using Fiji, QuPath and Elastix

Related publications (44)

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X-HEEP Poster - EcoCloud Event 2023

David Atienza Alonso, Miguel Peon Quiros, Simone Machetti, Pasquale Davide Schiavone

In this work, we present eXtendible Heterogeneous Energy-Efficient Platform (X-HEEP), an open-source, configurable, and extendible RISC-V microcontroller to support the integration of ultra-low-power edge accelerators natively. ...

2023

Cybersickness assessment framework(CSAF): An Open Source Repository for Standardized Cybersickness Experiments

Ronan Boulic, Nana Tian, Adriano Viegas Milani

Studies of cybersickness (CS) often require a significant invest- ment in creating the primary VR environment and other experiment- related features. In addition, minor differences in VR content in independent studies may lead to opposite results. This mot ...

IEEE2023

SwissCovid in the Perspective of Its Goals

Serge Vaudenay, Martin Vuagnoux

SwissCovid is the Swiss digital contact tracing app, which was deployed to help fighting against the COVID-19 pandemic. After a year of activity, it is high time to evaluate how effective it has been in its mission. At the highest peak, about 22% of the Sw ...

2022

ShapePipe: A modular weak-lensing processing and analysis pipeline

Jean-Luc Starck, Austin Chandler Peel

We present the first public release of ShapePipe, an open-source and modular weak-lensing measurement, analysis, and validation pipeline written in Python. We describe the design of the software and justify the choices made. We provide a brief description ...

2022

Detecting Text Reuse with Passim

Matteo Romanello

In this lesson you will learn about text reuse detection – the automatic identification of reused passages in texts – and why you might want to use it in your research. Through a detailed installation guide and two case studies, this lesson will teach you ...

2021

EaRL: An Open-Source Software for Earthquake Risk, Loss and Lifecycle Assessment

Dimitrios Lignos, Ahmed Mohamed Ahmed Elkady

Evaluating earthquake-induced losses, such as structural repair costs, downtime and casualties, is becoming a standard practice within the performance-based earthquake engineering framework. Nonetheless, this evaluation is a demanding task that requires de ...

2021

Graasp Desktop: Supporting Digital Education in Underconnected Schools in Africa

Denis Gillet, Juan Carlos Farah, Kim Lan Phan Hoang, Hagop Taminian

Over the past three years, the Go-Lab Goes Africa (GO-GA) initiative has focused on promoting and implementing digital education in Africa. GO-GA is a Horizon 2020 innovation action supported by the European Commission. One of the outcomes of this initiati ...

2021

Learning from History for Byzantine Robust Optimization

Martin Jaggi, Lie He, Sai Praneeth Reddy Karimireddy

Byzantine robustness has received significant attention recently given its importance for distributed and federated learning. In spite of this, we identify severe flaws in existing algorithms even when the data across the participants is identically distri ...

JMLR-JOURNAL MACHINE LEARNING RESEARCH2021

Analysis of SwissCovid

Serge Vaudenay, Martin Vuagnoux

We present an analysis of the SwissCovid application which is currently being tested. We observe that the essential part of SwissCovid is under the control of Apple and Google. Outsourcing the heart of SwissCovid to Apple and Google has apparent benefits i ...

2020

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Understanding lake dynamics is crucial to provide scientifically credible information for ecosystem management. In this context, three-dimensional hydrodynamic models are a key information source to assess critical but often subtle changes in lake dynamics ...

2020