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From Trees to Barcodes and Back Again:A Combinatorial, Probabilistic and Geometric Study of a Topological Inverse Problem

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Size theory

In mathematics, size theory studies the properties of topological spaces endowed with -valued functions, with respect to the change of these functions. More formally, the subject of size theory is the study of the natural pseudodistance between size pairs. A survey of size theory can be found in The beginning of size theory is rooted in the concept of size function, introduced by Frosini. Size functions have been initially used as a mathematical tool for shape comparison in computer vision and pattern recognition.

Triangular distribution

In probability theory and statistics, the triangular distribution is a continuous probability distribution with lower limit a, upper limit b and mode c, where a < b and a ≤ c ≤ b. The distribution simplifies when c = a or c = b. For example, if a = 0, b = 1 and c = 1, then the PDF and CDF become: This distribution for a = 0, b = 1 and c = 0 is the distribution of X = |X1 − X2|, where X1, X2 are two independent random variables with standard uniform distribution. The symmetric case arises when c = (a + b) / 2.

Human back

The human back, also called the dorsum (: dorsa), is the large posterior area of the human body, rising from the top of the buttocks to the back of the neck. It is the surface of the body opposite from the chest and the abdomen. The vertebral column runs the length of the back and creates a central area of recession. The breadth of the back is created by the shoulders at the top and the pelvis at the bottom. Back pain is a common medical condition, generally benign in origin.

Generalized permutation matrix

In mathematics, a generalized permutation matrix (or monomial matrix) is a matrix with the same nonzero pattern as a permutation matrix, i.e. there is exactly one nonzero entry in each row and each column. Unlike a permutation matrix, where the nonzero entry must be 1, in a generalized permutation matrix the nonzero entry can be any nonzero value. An example of a generalized permutation matrix is An invertible matrix A is a generalized permutation matrix if and only if it can be written as a product of an invertible diagonal matrix D and an (implicitly invertible) permutation matrix P: i.

DNA barcoding

DNA barcoding is a method of species identification using a short section of DNA from a specific gene or genes. The premise of DNA barcoding is that by comparison with a reference library of such DNA sections (also called "sequences"), an individual sequence can be used to uniquely identify an organism to species, just as a supermarket scanner uses the familiar black stripes of the UPC barcode to identify an item in its stock against its reference database.

Size function

Size functions are shape descriptors, in a geometrical/topological sense. They are functions from the half-plane to the natural numbers, counting certain connected components of a topological space. They are used in pattern recognition and topology. In size theory, the size function associated with the size pair is defined in the following way.

T-tree

In computer science a T-tree is a type of binary tree data structure that is used by main-memory databases, such as Datablitz, eXtremeDB, MySQL Cluster, Oracle TimesTen and MobileLite. A T-tree is a balanced index tree data structure optimized for cases where both the index and the actual data are fully kept in memory, just as a B-tree is an index structure optimized for storage on block oriented secondary storage devices like hard disks.

Geometric topology

In mathematics, geometric topology is the study of manifolds and maps between them, particularly embeddings of one manifold into another. Geometric topology as an area distinct from algebraic topology may be said to have originated in the 1935 classification of lens spaces by Reidemeister torsion, which required distinguishing spaces that are homotopy equivalent but not homeomorphic. This was the origin of simple homotopy theory. The use of the term geometric topology to describe these seems to have originated rather recently.

Beta-binomial distribution

In probability theory and statistics, the beta-binomial distribution is a family of discrete probability distributions on a finite support of non-negative integers arising when the probability of success in each of a fixed or known number of Bernoulli trials is either unknown or random. The beta-binomial distribution is the binomial distribution in which the probability of success at each of n trials is not fixed but randomly drawn from a beta distribution.

Parabolic induction

In mathematics, parabolic induction is a method of constructing representations of a reductive group from representations of its parabolic subgroups. If G is a reductive algebraic group and is the Langlands decomposition of a parabolic subgroup P, then parabolic induction consists of taking a representation of , extending it to P by letting N act trivially, and inducing the result from P to G. There are some generalizations of parabolic induction using cohomology, such as cohomological parabolic induction and Deligne–Lusztig theory.