Living specimen tomography by digital holographic microscopy: morphometry of testate amoeba

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Amplitude and phase reconstruction for Low-Energy Electron Holography of individual proteins

Single-molecule imaging methods are of importance in structural biology, and specifically in the imaging of proteins, since they can elucidate conformational variability and structural changes that might be lost in imaging methods relying on averaging proc ...

EPFL2022

Physics-informed neural networks for diffraction tomography

Demetri Psaltis, Carlo Gigli, Amirhossein Saba Shirvan, Ahmed Ayoub

We propose a physics-informed neural network (PINN) as the forward model for tomographic reconstructions of biological samples. We demonstrate that by training this network with the Helmholtz equation as a physical loss, we can predict the scattered field ...

SPIE-SOC PHOTO-OPTICAL INSTRUMENTATION ENGINEERS2022

Glass-in-glass infiltration for 3D micro-optical composite components

Andreas Mortensen, Yves Bellouard, Jérôme Faist, Gözden Torun, Enrico Casamenti, Luciano Borasi, Mathieu Bertrand

Chalcogenide glass exhibits a wide transmission window in the infrared range, a high refractive index, and nonlinear optical properties; however, due to its poor mechanical properties and low chemical and environmental stability, producing three-dimensiona ...

2022

Bragg edge tomography characterization of additively manufactured 316L steel

Roland Logé, Christian Leinenbach, Nikola Kalentics, Markus Strobl, Efthymios Polatidis

In this work we perform a neutron Bragg edge tomography of stainless steel 316L additive manufacturing samples, one as built via standard laser powder bed fusion, and one using the novel three-dimensional (3D) laser shock peening technique. First, we consi ...

AMER PHYSICAL SOC2022

Combining Model Driven and Data Driven Approaches for Inverse Problems in Parameter Estimation and Image Reconstruction: From Modelling to Validation

Thomas Yu

Machine learning has become the state of the art for the solution of the diverse inverse problems arising from computer vision and medical imaging, e.g. denoising, super-resolution, de-blurring, reconstruction from scanner data, quantitative magnetic reson ...

EPFL2022

Polarization-sensitive optics diffraction tomography

Demetri Psaltis, Joowon Lim, Elizabeth Elena Antoine, Amirhossein Saba Shirvan, Ahmed Ayoub

Polarization of light has been widely used as a contrast mechanism in two-dimensional (2D) microscopy and also in some three-dimensional (3D) imaging modalities. In this paper, we report the 3D tomographic reconstruction of the refractive index (RI) tensor ...

2021

Piecewise linear interface-capturing volume-of-fluid method in axisymmetric cylindrical coordinates

Andreas Pautz, Lubomír Bures, Yohei Sato

The paper describes a novel implementation of the piecewise linear interface-capturing volume-of-fluid method (PLIC-VOF) in axisymmetric cylindrical coordinates. The principal innovative feature involved in this work is that both the forward and inverse re ...

ACADEMIC PRESS INC ELSEVIER SCIENCE2021

3D reconstruction of weakly scattering objects from 2D intensity-only measurements using the Wolf transform

Demetri Psaltis, Joowon Lim, Elizabeth Elena Antoine, Ahmed Ayoub

A new approach to optical diffraction tomography (ODT) based on intensity measurements is presented. By applying the Wolf transform directly to intensity measurements, we observed unexpected behavior in the 3D reconstruction of the sample. Such a reconstru ...

2021

Phase calibration of a basic bright-field microscope for 3D metrology of transparent samples at the nanoscale

Martinus Gijs, Daniel Migliozzi, Bingying Zhao

Optical retrieval of the structure of transparent objects at the nano-scale requires adapted methods capable of probing their interaction with suitable light. Scattering events, for instance, depend on the content and the arrangement of the medium encounte ...

SPIE-INT SOC OPTICAL ENGINEERING2021

Sensing of Surface and Bulk Refractive Index Using Magnetophotonic Crystal with Hybrid Magneto-Optical Response

Serguei Sekatski

We propose an all-dielectric magneto-photonic crystal with a hybrid magneto-optical response that allows for the simultaneous measurements of the surface and bulk refractive index of the analyzed substance. The approach is based on two different spectral f ...

2021

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Combining Model Driven and Data Driven Approaches for Inverse Problems in Parameter Estimation and Image Reconstruction: From Modelling to Validation

Thomas Yu

EPFL2022