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From Bioinformatic Web Portals to Semantically Integrated Data Grid Networks

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Web portal

A web portal is a specially designed website that brings information from diverse sources, like emails, online fora and search engines, together in a uniform way. Usually, each information source gets its dedicated area on the page for displaying information (a portlet); often, the user can configure which ones to display. Variants of portals include mashups and intranet "dashboards" for executives and managers. The extent to which content is displayed in a "uniform way" may depend on the intended user and the intended purpose, as well as the diversity of the content.

Semantic data model

A semantic data model (SDM) is a high-level semantics-based database description and structuring formalism (database model) for databases. This database model is designed to capture more of the meaning of an application environment than is possible with contemporary database models. An SDM specification describes a database in terms of the kinds of entities that exist in the application environment, the classifications and groupings of those entities, and the structural interconnections among them.

Schema matching

The terms schema matching and mapping are often used interchangeably for a database process. For this article, we differentiate the two as follows: schema matching is the process of identifying that two objects are semantically related (scope of this article) while mapping refers to the transformations between the objects. For example, in the two schemas DB1.Student (Name, SSN, Level, Major, Marks) and DB2.Grad-Student (Name, ID, Major, Grades); possible matches would be: DB1.Student ≈ DB2.Grad-Student; DB1.

Data cleansing

Data cleansing or data cleaning is the process of detecting and correcting (or removing) corrupt or inaccurate records from a record set, table, or database and refers to identifying incomplete, incorrect, inaccurate or irrelevant parts of the data and then replacing, modifying, or deleting the dirty or coarse data. Data cleansing may be performed interactively with data wrangling tools, or as batch processing through scripting or a data quality firewall. After cleansing, a data set should be consistent with other similar data sets in the system.

Semantic heterogeneity

Semantic heterogeneity is when database schema or datasets for the same domain are developed by independent parties, resulting in differences in meaning and interpretation of data values. Beyond structured data, the problem of semantic heterogeneity is compounded due to the flexibility of semi-structured data and various tagging methods applied to documents or unstructured data. Semantic heterogeneity is one of the more important sources of differences in heterogeneous datasets.

Data virtualization

Data virtualization is an approach to data management that allows an application to retrieve and manipulate data without requiring technical details about the data, such as how it is formatted at source, or where it is physically located, and can provide a single customer view (or single view of any other entity) of the overall data. Unlike the traditional extract, transform, load ("ETL") process, the data remains in place, and real-time access is given to the source system for the data.

Three-schema approach

The three-schema approach, or three-schema concept, in software engineering is an approach to building information systems and systems information management that originated in the 1970s. It proposes three different views in systems development, with conceptual modelling being considered the key to achieving data integration.

Enterprise portal

An enterprise portal, also known as an enterprise information portal (EIP), is a framework for integrating information, people and processes across organizational boundaries in a manner similar to the more general web portals. Enterprise portals provide a secure unified access point, often in the form of a web-based user interface, and are designed to aggregate and personalize information through application-specific portlets. One hallmark of enterprise portals is the de-centralized content contribution and content management, which keeps the information always updated.

Database schema

The database schema is the structure of a database described in a formal language supported typically by a relational database management system (RDBMS). The term "schema" refers to the organization of data as a blueprint of how the database is constructed (divided into database tables in the case of relational databases). The formal definition of a database schema is a set of formulas (sentences) called integrity constraints imposed on a database. These integrity constraints ensure compatibility between parts of the schema.

Linked data

In computing, linked data is structured data which is interlinked with other data so it becomes more useful through semantic queries. It builds upon standard Web technologies such as HTTP, RDF and URIs, but rather than using them to serve web pages only for human readers, it extends them to share information in a way that can be read automatically by computers. Part of the vision of linked data is for the Internet to become a global database.