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Constructing a tree from homeomorphic subtrees, with applications to computational evolutionary biology

Related publications (126)

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Results on Sparse Integer Programming and Geometric Independent Sets

Jana Tabea Cslovjecsek

An integer linear program is a problem of the form max{c^T x : Ax=b, x >= 0, x integer}, where A is in Z^(n x m), b in Z^m, and c in Z^n.Solving an integer linear program is NP-hard in general, but there are several assumptions for which it becomes fixed p ...

EPFL2023

Maximum Independent Set: Self-Training through Dynamic Programming

Volkan Cevher, Grigorios Chrysos, Efstratios Panteleimon Skoulakis

This work presents a graph neural network (GNN) framework for solving the maximum independent set (MIS) problem, inspired by dynamic programming (DP). Specifically, given a graph, we propose a DP-like recursive algorithm based on GNNs that firstly construc ...

2023

Learning Sparse Graphons And The Generalized Kesten-Stigum Threshold

Emmanuel Abbé

The problem of learning graphons has attracted considerable attention across several scientific communities, with significant progress over the re-cent years in sparser regimes. Yet, the current techniques still require diverg-ing degrees in order to succe ...

INST MATHEMATICAL STATISTICS-IMS2023

How to Find Molecules with Long-lasting Charge Migration?

Jiri Vanicek, Alan Scheidegger, Nikolay Golubev

Under certain conditions, the ionization of a molecule may create a superposition of electronic states, leading to ultrafast electron dynamics. If controlled, this motion could be used in attochemistry applications, but it has been shown that the decoheren ...

SWISS CHEMICAL SOC2023

On Polynomial Algorithms for Normalizing Formulas

Viktor Kuncak, Simon Guilloud, Mario Bucev

We propose a new approach for normalization and simplification of logical formulas. Our approach is based on algorithms for lattice-like structures. Specifically, we present two efficient algorithms for computing a normal form and deciding the word problem ...

2022

Approximate CVPp in time 2(0.802n)

Friedrich Eisenbrand, Moritz Andreas Venzin

We show that a constant factor approximation of the shortest and closest lattice vector problem in any l(p)-norm can be computed in time 2((0.802 + epsilon)n). This matches the currently fastest constant factor approximation algorithm for the shortest vect ...

ACADEMIC PRESS INC ELSEVIER SCIENCE2022

The power of adaptivity in source identification with time queries on the path

Patrick Thiran, Gergely Odor, Victor Cyril L Lecomte

We study the problem of identifying the source of a stochastic diffusion process spreading on a graph based on the arrival times of the diffusion at a few queried nodes. In a graph

G=(V,E)

, an unknown source node

v^* \in V

is drawn uniformly at random, ...

2022

Equivalence Checking for Orthocomplemented Bisemilattices in Log-Linear Time

Viktor Kuncak, Simon Guilloud

We present a quasilinear time algorithm to decide the word problem on a natural algebraic structures we call orthocomplemented bisemilattices, a subtheory of boolean algebra. We use as a base a variation of Hopcroft, Ullman and Aho algorithm for tree isomo ...

Springer2022

Safety Verification for Urban Air Mobility Scheduling

Nils Gustav Nilsson

In Urban Air Mobility (UAM) networks, takeoff and landing sites, called vertiports, are likely to experience intermittent closures due to, e.g., adverse weather. For safety, it will be required that all in-transit Urban Air Vehicles (UAVs) in a UAM network ...

ELSEVIER2022

Sequential metric dimension for random graphs

Patrick Thiran, Gergely Odor

In the localization game on a graph, the goal is to find a fixed but unknown target node v* with the least number of distance queries possible. In the j-th step of the game, the player queries a single node v_j and receives, as an answer to their query, th ...

2021

The power of adaptivity in source identification with time queries on the path

Patrick Thiran, Gergely Odor, Victor Cyril L Lecomte

We study the problem of identifying the source of a stochastic diffusion process spreading on a graph based on the arrival times of the diffusion at a few queried nodes. In a graph

G=(V,E)

, an unknown source node

v^* \in V

is drawn uniformly at random, ...

2022