Informatics | EPFL Graph Search

Informatics is the study of computational systems. According to the ACM Europe Council and Informatics Europe, informatics is synonymous with computer science and computing as a profession, in which the central notion is transformation of information. In other countries, the term "informatics" is used with a different meaning in the context of library science, in which case it is synonymous with data storage and retrieval. Different meanings In some countries, depending on local interpretations, the term "informatics" is used synonymously to mean information systems, information science, information theory, information engineering, information technology, information processing, or other theoretical or practical fields. In Germany, the term informatics almost exactly corresponds to modern computer science. Accordingly, universities in continental Europe usually translate "informatics" as computer science, or sometimes information and computer science, alth

Predictive Engineering the Membrane Composition of Neocortical Neurons

Georges Khazen

The brain is the most mysterious and intricate biological structure known to man. It dominates the way we live, think, reason and behave. It is built of billions of neurons that communicate with each other through trillions of connections using electrical signals. The neocortex is undoubtedly the most complex brain region, hosting all higher brain functions such as sensory perception and cognitive behavior. Scientists have been struggling for more than a century to identify the anatomical blueprint of its cellular organization and to understand its dynamic behavior. The Blue Brain Project aims to develop the first simulation-based research environment for modeling and studying the basic building blocks of the neocortex, the neocortical column. The model column is based on data obtained from the juvenile rat somatosensory cortex. The best way to build such a large-scale model is by following a data-constraint driven approach and integrating biological information at different levels. In this thesis, I present novel informatics approaches to systematically constrain the membrane protein composition of different neocortical neuron types. In the first study, I investigate the single-cell gene expression patterns of ion channels in different neuron types and present a combinatorial rule extractor model that reverse engineers the observed expression rules in ten different neocortical neuron types. In the second study, I present a physical constrain checker that mines different publicly available data resources regarding all known membrane proteins such as channels and receptors, and extracts available information relating to their specific location on different parts of the neuronal morphologies, their 3D morphological structures as well as their genetic and proteomic annotations. Combining the results from both studies allows us to build neuronal models that better reflect the biological reality of neocortical neurons, ensuring the correct localization and distribution of membrane proteins across neuronal morphologies and computing their maximum count number based on their molecular surface areas and the available neuronal membrane surface area. This novel data-constraint driven approach is the first step towards integrating existing biological knowledge and constraints from various data sources into the process of building neuron models, in this way improving the neuron models as they come closer to the biological reality of real neurons.

EPFL2011

Control Strategies for Active Lower Extremity Prosthetics and Orthotics: A Review

Hannes Bleuler, Mohamed Bouri, Roger Gassert, Olivier Lambercy, Jeremy Olivier

Technological advancements have led to the development of numerous wearable robotic devices for the physical assistance and restoration of human locomotion. While many challenges remain with respect to the mechanical design of such devices, it is at least equally challenging and important to develop strategies to control them in concert with the intentions of the user. This work reviews the state-of-the-art techniques for controlling portable active lower limb prosthetic and orthotic (P/O) devices in the context of locomotive activities of daily living (ADL), and considers how these can be interfaced with the user's sensory-motor control system. This review underscores the practical challenges and opportunities associated with P/O control, which can be used to accelerate future developments in this field. Furthermore, this work provides a classification scheme for the comparison of the various control strategies. As a novel contribution, a general framework for the control of portable gait-assistance devices is proposed. This framework accounts for the physical and informatic interactions between the controller, the user, the environment, and the mechanical device itself. Such a treatment of P/Os -- not as independent devices, but as actors within an ecosystem -- is suggested to be necessary to structure the next generation of intelligent and multifunctional controllers. Each element of the proposed framework is discussed with respect to the role that it plays in the assistance of locomotion, along with how its states can be sensed as inputs to the controller. The reviewed controllers are shown to fit within different levels of a hierarchical scheme, which loosely resembles the structure and functionality of the nominal human central nervous system (CNS). Active and passive safety mechanisms are considered to be central aspects underlying all of P/O design and control, and are shown to be critical for regulatory approval of such devices for real-world use. The works discussed herein provide evidence that, while we are getting ever closer, significant challenges still exist for the development of controllers for portable powered P/O devices that can seamlessly integrate with the user's neuromusculoskeletal system and are practical for use in locomotive ADL.

BioMed Central2015

Predictive Engineering the Membrane Composition of Neocortical Neurons

Georges Khazen

EPFL2011

Control Strategies for Active Lower Extremity Prosthetics and Orthotics: A Review

Hannes Bleuler, Mohamed Bouri, Roger Gassert, Olivier Lambercy, Jeremy Olivier

BioMed Central2015