Publications associées à Séquence conservée

Ancestral genome reconstruction enhances transposable element annotation by identifying degenerate integrants

Didier Trono, Evaristo Jose Planet Letschert, Wayo Matsushima

Growing evidence indicates that transposable elements (TEs) play important roles in evolution by providing genomes with coding and non-coding sequences. Identification of TE-derived functional elements, however, has relied on TE annotations in individual s ...

2024

Generative power of a protein language model trained on multiple sequence alignments

Anne-Florence Raphaëlle Bitbol, Damiano Sgarbossa, Umberto Lupo

Computational models starting from large ensembles of evolutionarily related protein sequences capture a representation of protein families and learn constraints associated to protein structure and function. They thus open the possibility for generating no ...

eLIFE SCIENCES PUBL LTD2023

Supplementary dataset for Enzyme promiscuous profiles for protein sequence and reaction annotation

Vassily Hatzimanikatis, Ljubisa Miskovic, Homa Mohammadi Peyhani, Anastasia Sveshnikova

The data and scripts used to produce, analyze, and visualize the results of the manuscript Enzyme promiscuous profiles for protein sequence and reaction annotation by Homa MohammadiPeyhani, Anastasia Sveshnikova, Ljubisa Miskovic, and Vassily Hatzimanikati ...

Zenodo2023

Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos

Denis Duboule, Lucille Delisle, Alexandre Gauthier Aurèle Mayran, Hocine Rekaik, Aurélie Hintermann, Célia Corinne Renée Bochaton

Temporal activation of Hox genes in mouse pseudo-embryos in vitro initiates at the anterior part of the cluster and is accompanied by asymmetric loading of cohesin. Posterior CTCF sites then successively act as transient insulators, regulating the timed tr ...

NATURE PORTFOLIO2023

Aging Fly Cell Atlas identifies exhaustive aging features at cellular resolution

Maria Brbic, Sandy Lee

Aging is characterized by a decline in tissue function, but the underlying changes at cellular resolution across the organism remain unclear. Here, we present the Aging Fly Cell Atlas, a single-nucleus transcriptomic map of the whole aging Drosophila. We c ...

AMER ASSOC ADVANCEMENT SCIENCE2023

Impact of phylogeny on structural contact inference from protein sequence data

Anne-Florence Raphaëlle Bitbol, Nicola Dietler, Umberto Lupo

Local and global inference methods have been developed to infer structural contacts from multiple sequence alignments of homologous proteins. They rely on correlations in amino acid usage at contacting sites. Because homologous proteins share a common ance ...

ROYAL SOC2023

First paleoproteome study of fossil fish otoliths and the pristine preservation of the biomineral crystal host

Anders Meibom, Jaroslaw Hubert Stolarski, Jinming Guo

Otoliths are calcium carbonate components of the stato-acoustical organ responsible for hearing and maintenance of the body balance in teleost fish. During their formation, control over, e.g., morphology and carbonate polymorph is influenced by complex ins ...

NATURE PORTFOLIO2023

Notch signaling drives intestinal graft-versus-host disease in mice and nonhuman primates

Freddy Radtke, Ute Koch, Catherine Michelle Hoffman

Notch signaling promotes T cell pathogenicity and graft-versus-host disease (GVHD) after allogeneic hematopoietic cell transplantation (allo-HCT) in mice, with a dominant role for the Delta-like Notch ligand DLL4. To assess whether Notch's effects are evol ...

AMER ASSOC ADVANCEMENT SCIENCE2023

Cellularization across eukaryotes: Conserved mechanisms and novel strategies

Omaya Pierre Dudin

Many eukaryotes form multinucleated cells during their devel-opment. Some cells persist as such during their lifetime, others choose to cleave each nucleus individually using a specialized cytokinetic process known as cellularization. What is cellula-rizat ...

CURRENT BIOLOGY LTD2023

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Séquence conservée

Ancestral genome reconstruction enhances transposable element annotation by identifying degenerate integrants

Meeting our Makers:Uncovering the cis-regulatory activity of transposable elements using statistical learning

Generative power of a protein language model trained on multiple sequence alignments

Supplementary dataset for Enzyme promiscuous profiles for protein sequence and reaction annotation

Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos

Aging Fly Cell Atlas identifies exhaustive aging features at cellular resolution

Impact of phylogeny on structural contact inference from protein sequence data

First paleoproteome study of fossil fish otoliths and the pristine preservation of the biomineral crystal host

Notch signaling drives intestinal graft-versus-host disease in mice and nonhuman primates

Cellularization across eukaryotes: Conserved mechanisms and novel strategies

Graph Chatbot

Chattez avec Graph Search

Meeting our Makers:Uncovering the cis-regulatory activity of transposable elements using statistical learning

Ancestral genome reconstruction enhances transposable element annotation by identifying degenerate integrants

Aging Fly Cell Atlas identifies exhaustive aging features at cellular resolution

Generative power of a protein language model trained on multiple sequence alignments

Impact of phylogeny on structural contact inference from protein sequence data

Sequential and directional insulation by conserved CTCF sites underlies the Hox timer in stembryos

Notch signaling drives intestinal graft-versus-host disease in mice and nonhuman primates

Supplementary dataset for Enzyme promiscuous profiles for protein sequence and reaction annotation

Cellularization across eukaryotes: Conserved mechanisms and novel strategies

First paleoproteome study of fossil fish otoliths and the pristine preservation of the biomineral crystal host