Publications associées à Equilibrium thermodynamics

Systematic characterization of flux and network thermodynamic states for identification of metabolic engineering targets

Vassily Hatzimanikatis, Ljubisa Miskovic, Keng Cher Soh

In order to identify targets for metabolic engineering interventions or understand the physiology of the cell, the first and foremost prerequisite is the knowledge or a hypothesis about the intracellular network state(s). However, even with the advanced me ...

2012

Systematic Metabolic Engineering of Recombinant Xylose-Utilizing S. cerevisiae: Strategies for Improving Xylose Uptake Rate

Vassily Hatzimanikatis, Ljubisa Miskovic, Keng Cher Soh

Recent advancements in metabolomics and fluxomics methods and ever-increasing amount of available experimental data necessitate systems-oriented methodologies for efficient and systematic integration of data into consistent large-scale kinetic models capab ...

2012

Kinetic modeling of the central carbon metabolism of Escherichia Coli

Vassily Hatzimanikatis, Ljubisa Miskovic

Precise information about kinetic properties of enzymes within a biochemical network is a necessary ingredient of any successful metabolic engineering design. Such information inevitably involves uncertainty due to changes in cellular and process parameter ...

2010

Quantitative Analysis of Metabolic Networks Through the Explicit Consideration of Kinetic Mechanisms

Vassily Hatzimanikatis, Ljubisa Miskovic

Engineering of large-scale metabolic pathways to maximize production of a certain substance or to minimize creation of undesired chemicals require explicit information about the underlying enzyme kinetics. Unfortunately, such information is frequently not ...

2010

Improving Ethanol Production of Xylose-Utilizing Saccharomyces cerevisiae

Vassily Hatzimanikatis, Ljubisa Miskovic

Abundant in nature lignocellulosic plant biomass represent a promising, sustainable, source of energy as it can be converted into fuel ethanol through the fermentation of one of its prevalent sugar constituents – xylose. Xylose-utilizing recombinant Saccha ...

2010

Modeling of uncertainties in biochemical reactions

Vassily Hatzimanikatis, Ljubisa Miskovic

Mathematical modeling is an indispensable tool for research and development in biotechnology and bioengineering. The formulation of kinetic models of biochemical networks depends on knowledge of the kinetic properties of the enzymes of the individual react ...

Wiley-Blackwell2010

Granular Thermodynamics

Pedro Miguel Nunes Pereira de Almeida Reis

We present experimental evidence for a strong analogy between quasi‐2D uniform non‐equilibrium steady states (NESS) of excited granular materials and equilibrium thermodynamics. Under isochoric conditions we find that the structure of granular NESS, as mea ...

AIP2009

Gas assisted focused electron beam induced etching of alumina

Patrik Willi Hoffmann, Tristan Bret, Bamdad Afra

This study investigates focused electron beam induced etching for the removal of alumina particles on patterned extreme ultra violet (EUV) mask using nitrosyl chloride (NOCl) as assist gas. As potential contaminant, particles of aluminum oxide (alumina, Al ...

2009

A mesoscale granular model for the mechanical behavior of alloys during solidification

Michel Rappaz, Stéphane Vernède, Jonathan Dantzig

We present a two-dimensional granular model for the mechanical behavior of an ensemble of globular grains during solidification. The grain structure is produced by a Voronoi tessellation based on an array of predefined nuclei. We consider the fluid flow ca ...

Elsevier2009

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Equilibrium thermodynamics

Physics of Polariton Condensates in GaN-based Planar Microcavities

Systematic characterization of flux and network thermodynamic states for identification of metabolic engineering targets

Systematic Metabolic Engineering of Recombinant Xylose-Utilizing S. cerevisiae: Strategies for Improving Xylose Uptake Rate

Kinetic modeling of the central carbon metabolism of Escherichia Coli

Quantitative Analysis of Metabolic Networks Through the Explicit Consideration of Kinetic Mechanisms

Improving Ethanol Production of Xylose-Utilizing Saccharomyces cerevisiae

Modeling of uncertainties in biochemical reactions

Granular Thermodynamics

Gas assisted focused electron beam induced etching of alumina

A mesoscale granular model for the mechanical behavior of alloys during solidification

Graph Chatbot

Chattez avec Graph Search

Physics of Polariton Condensates in GaN-based Planar Microcavities

Gas assisted focused electron beam induced etching of alumina

Systematic characterization of flux and network thermodynamic states for identification of metabolic engineering targets

Systematic Metabolic Engineering of Recombinant Xylose-Utilizing S. cerevisiae: Strategies for Improving Xylose Uptake Rate

Modeling of uncertainties in biochemical reactions

Kinetic modeling of the central carbon metabolism of Escherichia Coli

Quantitative Analysis of Metabolic Networks Through the Explicit Consideration of Kinetic Mechanisms

Improving Ethanol Production of Xylose-Utilizing Saccharomyces cerevisiae

A mesoscale granular model for the mechanical behavior of alloys during solidification