Approximation de Born-Oppenheimer

L’approximation de Born et Oppenheimer permet de simplifier drastiquement l’équation de Schrödinger pour le calcul de la fonction d'onde d'une molécule. Elle consiste à découpler le mouvement des électrons de celui des noyaux, du fait de leurs masses très différentes. En effet, à cause du fait que la masse d'un nucléon soit environ (~ ) fois plus élevée que celle d'un électron, les noyaux ont un mouvement beaucoup plus lent que les électrons. On peut donc considérer que les électrons s’adaptent de manière adiabatique à la position des noyaux, c'est-à-dire que les électrons "bougent" tellement vite par rapport aux noyaux qu'ils peuvent s'adapter instantanément (du point de vue des noyaux) à leur mouvement. Dérivation de l'approximation de Born-Oppenheimer Outre le caractère adiabatique du système, l'article original de 1927, intitulé « Zur Quantentheorie der Molekeln » développe l'approximation en fonction d'un paramètre x (sup

High-order geometric integrators for nonadiabatic molecular quantum dynamics and their applications to explore conical intersections

Seonghoon Choi

Accurate simulations of molecular quantum dynamics are crucial for understanding numerous natural processes and experimental results. Yet, such high-accuracy simulations are challenging even for relatively simple systems where the Born-Oppenheimer approximation is valid. Worse still, due to the ubiquity of conical intersections in molecules, it is often necessary to go beyond this celebrated approximation and employ even more sophisticated methods that can describe nonadiabatic processes involving multiple coupled electronic states.Geometric integrators provide a way to simulate nonadiabatic quantum dynamics with high accuracy while exactly conserving geometric properties, such as norm, energy, symplecticity, and time reversibility. However, the exact conservation of these properties typically leads to a higher computational cost when compared with non-geometric integrators of the same order of accuracy. We remedy this lack of efficiency by employing various composition methods to obtain high-order geometric integrators, competitive in efficiency even with some non-geometric integrators.To overcome the limited applicability of the popular split-operator algorithms, we present geometric integrators that can solve the time-dependent Schroedinger equation efficiently regardless of the form of the Hamiltonian. Employing these integrators, we systematically compare the different representations of the molecular Hamiltonian for their suitability for simulating nonadiabatic dynamics at a conical intersection and find that the rarely used exact quasidiabatic Hamiltonian, which includes the often-neglected residual nonadiabatic couplings, yields the most accurate results. Accordingly, we present a method for quantifying the validity of ignoring these residual couplings and show that depending on the system, initial state, and employed quasidiabatization scheme, neglecting the residual couplings can indeed result in inaccurate dynamics.The computational cost of exact quantum simulations quickly becomes prohibitively high as the system size increases. For high-dimensional simulations, one can either optimize the available basis set, e.g., by employing adaptive phase space grids or, alternatively, employ a more approximate approach, such as mixed quantum-classical Ehrenfest dynamics, that provides a useful qualitative picture. Although Ehrenfest dynamics and exact quantum dynamics simulated on an adaptive grid may appear unrelated, we show that, surprisingly, the high-order geometric integrators for these two problems can, in fact, be obtained by using the same splitting and composition methods.

EPFL2022

i-PI 2.0: A universal force engine for advanced molecular simulations

Sébastien Pierre Bienvenue, Michele Ceriotti, Bingqing Cheng, Alice Cuzzocrea, Benjamin Aaron Helfrecht, Przemyslaw Juda, Venkat Kapil, Robert Horst Meissner, Riccardo Petraglia, Mariana Rossi Carvalho, Gareth Aneurin Tribello, David Mark Wilkins

Progress in the atomic-scale modeling of matter over the past decade has been tremendous. This progress has been brought about by improvements in methods for evaluating interatomic forces that work by either solving the electronic structure problem explicitly, or by computing accurate approximations of the solution and by the development of techniques that use the Born-Oppenheimer (BO) forces to move the atoms on the BO potential energy surface. As a consequence of these developments it is now possible to identify stable or metastable states, to sample configurations consistent with the appropriate thermodynamic ensemble, and to estimate the kinetics of reactions and phase transitions. All too often, however, progress is slowed down by the bottleneck associated with implementing new optimization algorithms and/or sampling techniques into the many existing electronic-structure and empirical-potential codes. To address this problem, we are thus releasing a new version of the i-PI software. This piece of software is an easily extensible framework for implementing advanced atomistic simulation techniques using interatomic potentials and forces calculated by an external driver code. While the original version of the code (Ceriotti et al., 2014) was developed with a focus on path integral molecular dynamics techniques, this second release of i-PI not only includes several new advanced path integral methods, but also offers other classes of algorithms. In other words, i-PI is moving towards becoming a universal force engine that is both modular and tightly coupled to the driver codes that evaluate the potential energy surface and its derivatives. Program summary Program Title: i-PI Program Files doi: http://dx.doLorg/10.17632/x792grbm9g.1 Licensing provisions: GPLv3, MIT Programming language: Python External routines/libraries: NumPy Nature of problem: Lowering the implementation barrier to bring state-of-the-art sampling and atomistic modeling techniques to ab initio and empirical potentials programs. Solution method: Advanced sampling methods, including path-integral molecular dynamics techniques, are implemented in a Python interface. Any electronic structure code can be patched to receive the atomic coordinates from the Python interface, and to return the forces and energy that are used to integrate the equations of motion, optimize atomic geometries, etc. Restrictions: This code does not compute interatomic potentials, although the distribution includes sample driver codes that can be used to test different techniques using a few simple model force fields. (C) 2018 Elsevier B.V. All rights reserved.

ELSEVIER SCIENCE BV2019

Efficient geometric integrators for the linear and nonlinear time-dependent Schrödinger equation

Julien Roulet

Many physical and chemical reactions are driven by nonadiabatic processes, which imply the breakdown of the celebrated Born-Oppenheimer approximation. To understand these processes, experimentalists employ spectroscopic techniques. However, the obtained results are difficult to decipher, and accurate molecular quantum dynamics simulations are used to interpret the results.The second-order split-operator algorithm is one of the most popular numerical methods for simulating the nonadiabatic quantum dynamics because it is explicit, easy to implement, and it preserves many geometric properties of the exact solution. However, the second-order accuracy of this algorithm makes it unaffordable if very accurate results are needed, as tiny time steps are required. To remedy this lack of efficiency, we use composition methods to generate higher-order split-operator algorithms.Although compositions methods increase the accuracy of the standard split-operator algorithm to arbitrary even orders of convergence, the efficiency of the obtained algorithms is still questioned because the computational cost per time step increases drastically with the order of convergence. Therefore, using one- and three-dimensional models of NaI and pyrazine, respectively, we investigate the convergence, efficiency, and geometric properties of these high-order integrators and find that they are, for accurate simulations, more efficient than the standard split-operator algorithm while still preserving the same geometric properties. Besides employing these integrators for simulating the nonadiabatic quantum dynamics, we also explore quantum control and, more specifically, local control theory. This technique uses the instantaneous dynamics of the system to compute an electric field, which interacts with the system in order to drive the state in a desired direction. Because the electric field is obtained from the state itself, we demonstrate that this technique translates into a nonlinear time-dependent Schrödinger equation. Although it is geometric and second-order accurate for simple nonlinearities, the standard split-operator algorithm loses its time-reversal symmetry and second-order accuracy when employed for more complicated nonlinear time-dependent Schrödinger equations. One example of the latter is the one appearing in local control theory.We demonstrate that this lack of generality of the standard split-operator algorithm occurs due to its explicit nature. Thus, we propose two strategies to overcome this issue: First, we completely abandon the split-operator algorithm and present a numerical method based on the implicit midpoint method instead. Second, we make the standard split-operator algorithm implicit, which avoids abandoning the split-operator algorithm altogether. The accuracy and geometric properties of both strategies are then numerically verified using a two-dimensional model of retinal, a molecule whose photochemistry triggers the first event in the biological process of vision. The results demonstrate that both approaches yield second-order methods that preserve all the geometric properties of the exact solution. Because the developed integrators are symmetric, we further improve their accuracy and efficiency using composition methods.

EPFL2022

Efficient geometric integrators for the linear and nonlinear time-dependent Schrödinger equation

Julien Roulet

EPFL2022

High-order geometric integrators for nonadiabatic molecular quantum dynamics and their applications to explore conical intersections

Seonghoon Choi

EPFL2022

i-PI 2.0: A universal force engine for advanced molecular simulations

ELSEVIER SCIENCE BV2019