Fibrogenic fibroblasts increase intercellular adhesion strength by reinforcing individual OB-cadherin bonds

We have previously shown that the switch from N-cadherin to OB-cadherin expression increases intercellular adhesion between fibroblasts during their transition from a migratory to a fibrogenic phenotype. Using atomic force microscopy we here show that part of this stronger adhesion is accomplished because OB-cadherin bonds resist similar to twofold higher forces compared with N-cadherin junctions. By assessing the adhesion force between recombinant cadherin dimers and between native cadherins in the membrane of spread fibroblasts, we demonstrate that cadherin bonds are reinforced over time with two distinct force increments. By modulating the degree of lateral cadherin diffusion and F-actin organization we can attribute the resulting three force states to the single-molecule bond rather than to cadherin cluster formation. Notably, association with actin filaments enhances cadherin adhesion strength on the single-molecule level up to threefold; actin depolymerization reduces single-bond strength to the level of cadherin constructs missing the cytoplasmic domain. Hence, fibroblasts reinforce intercellular contacts by: (1) switching from N- to OB-cadherin expression; (2) increasing the strength of single-molecule bonds in three distinct steps; and (3) actin-promoted intrinsic activation of cadherin extracellular binding. We propose that this plasticity adapts fibroblast adhesions to the changing mechanical microenvironment of tissue under remodeling.

Quasistatic and dynamic force microscopy of single antigen-antibody complexes and fibrin-fibrinogen systems

The molecular processes based on the specific receptor-ligand interactions (e.g. immune response to a foreign antigen, communication between nerve cells, etc.) are essential for a good and stable performance of living organisms. The aim of the present work is to study such molecular processes with the Atomic Force Microscope (AFM) operated in Force Spectroscopy (FS) mode. Information such as the force and length of the ligand-receptor bond rupture could be obtained from the standard quasistatic FS studies, whereas no external dithering applied to the AFM tips. Firstly, the antigen-antibody interactions were examined with the Bovine Serum Albumin (BSA) protein and its poly- and two different monoclonal antibodies. It was shown that the peak unbinding force depends on the type of antibody and the antibody concentration. The single potential barrier is dominant for the interaction between BSA and monoclonal antibodies and was revealed from the loading rate-dependent measurements. Secondly, we are interested in the process of fibrin gel formation, in particular in the forces involved in this process. It was demonstrated that the fibrin-fibrinogen interaction is the specific one. The unbinding force rupture for single fibrin-fibrin(ogen) complex was determined to be of about 320 pN at a loading rate of 3.5 nN/s. The single potential barrier is also dominant for this interaction. Moreover, a new method of direct and continuous measurement of the spring constant of single molecules or molecular complexes has been elaborated in our laboratory. To this end, the standard FS technique with functionalized tips and samples is combined with a small dithering of the AFM tip. The change of the dithering amplitude as a function of the pulling force is measured in order to extract the spring constant of the complex. The potentialities of this technique were demonstrated for the experiments with single BSA – polyclonal antibody to BSA (Ab-BSA) and fibrinogen – fibrinogen complexes.

EPFL2004

Scaling properties of DNA knots studied by atomic force microscopy

Erika Ercolini

The main subject of the present thesis is the experimental study of the scaling properties of DNA knots of different complexities by tapping mode atomic force microscopy (AFM) in air. Homo- or heterogeneous mixture of DNA knot types were deposited onto mica in regimes of (i) strong adsorption, which induces a kinetic trapping of the molecules, and of (ii) weak adsorption, which permits relaxation on the surface. The contour of each knotted molecule was analyzed by a box counting algorithm, giving the number of boxes containing a part of the molecule, N(L), as a function of the box size, L, allowing to recover the relation N(L) ≈ L-df, where df is the fractal dimension and ν = 1/df is the scaling exponent. This relationship is complicated by the presence of a persistence length of DNA (about 50 nm) which introduces a crossover from a rigid rod behavior to a self-avoiding walk behavior. In (i) the radius of gyration of the adsorbed DNA knot scales with the 3D Flory exponent ν ≈ 0.58 within error. In (ii), the value ν ≈ 0.66, intermediate between the 3D and 2D (ν = 3/4) exponents, was found, indicating an incomplete 2D relaxation or a different polymer universality class. A different analysis, where the fractal dimension was determined by a customized box counting algorithm giving the knot mass as a function of the box size, yielded compatible results. In the case of weak binding conditions, AFM images show evidence of the localization of knot crossings, which is an effect theoretically predicted for knotted polymers confined in two dimensions (flat knots). Part of this thesis is dedicated to a fascinating application of AFM: the imaging of biomolecules in an aqueous buffer. In particular, images of plasmids adsorbed to mica strong enough to be visualized and loosely enough to see them moving in consecutive scans will be shown. The possibility of imaging under buffer molecules loosely anchored to the substrate opens the way to the investigation of biological processes near physiological conditions. The first step of the study of homologous recombination will be presented. We will also show images concerning our study of the activity of topoisomerase I on supercoiled plasmids. Clusters of DNA molecules and proteins were found when imaging in presence of magnesium, in agreement with recent findings by AFM in air. The research on topoisomerases and their interactions with inhibitors or poisons is a hot topic, being these enzymes targets of anti-cancer drugs. Our study paves the way to the investigation of the activity of topoisomerase II, the enzyme which removes knots from DNA. Finally, the principles of static and dynamic light scattering, and the results of dynamic light scattering on latex beads of known size will be presented. Particular emphasis will be given to the discussion of the contribution of light scattering techniques for future experiments on the study of the static and dynamic properties of DNA knotted molecules in solution. These experiments would contribute to shed light on the possible dependence of the gyration radius of knotted polymers on the knot type, and would allow testing theoretical predictions about their relaxation time.

EPFL2008

Quasistatic and dynamic force microscopy of single antigen-antibody complexes and fibrin-fibrinogen systems

EPFL2004

Scaling properties of DNA knots studied by atomic force microscopy

Erika Ercolini

EPFL2008