3D Reconstruction and Comparison of Shapes of DNA Minicircles Observed by Cryo-Electron Microscopy
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Inspired by the combinatorial denoising method {\tt DUDE} \cite{WOSVW04}, we present efficient algorithms for implementing this idea for arbitrary contexts or for using it within subsequences. We also propose effective, efficient denoising error estimators ...
In order to cope with sustainable development policy, buildings should be at least healthy, comfortable and energy efficient. Criteria for assessing individually the occupant's perceived health, the provided thermal, visual, acoustical comfort, the indoor ...
Alginate gel formation on-chip is presented in the first part of this thesis. The technique allows immobilization, and release, of biological cells on-chip. Furthermore, via layer by layer deposition, a locally heterogeneous environment can be generated at ...
The study of genomic inversions (or reversals) has been a mainstay of computational genomics for nearly 20 years. After the initial breakthrough of Hannenhalli and Pevzner, who gave the first polynomial-time algorithm for sorting signed permutations by inv ...
An ever more complete picture of the organization and function of the endocytic pathway is emerging. New mechanisms, and in particular lipid- based mechanisms that couple membrane dynamics and sorting, are being unraveled. But the final picture is still co ...
DNA is a long polymer with the form of a double helix of about two nanometers diameter (2.10-9 meters). It is composed of nucleotides whose sequence carries the information of heredity. The four possible nucleotides have slightly different geometries, and ...
Tyrosinase is a type I membrane protein found in melanosomes, which are lysosomal-like organelles and specific for pigment cells. A mutation of mouse tyrosinase, platinum (cp), leads to truncation of tyrosinase's cytosolic tail, and results in misrouting t ...
We propose a new exact Euclidean distance transformation (DT) by propagation, using bucket sorting. A fast but approximate DT is first computed using a coarse neighborhood. A sequence of larger neighborhoods is then used to gradually improve this approxima ...
The message passing programs are executed with the Parallel Virtual Machine (PVM) library and the shared memory programs are executed using TreadMarks. The programs are Water and Barnes-Hut from the SPLASH benchmark suite; 3-D FFT, Integer Sort (IS) and Em ...