Publication

Integrating geo-referenced multiscale and multidisciplinary data for the management of biodiversity in livestock genetic resources

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Mapping affinities: visualizing academic practice through collaboration

Dario Rodighiero

Academic affinities are one of the most fundamental hidden dynamics that drive scientific development. Some affinities are actual, and consequently can be measured through classical academic metrics such as co-authoring. Other affinities are potential, and ...

EPFL2018

GenMon-CH : a Web-GIS application for the monitoring of Farm Animal Genetic Resources (FAnGR) in Switzerland

Stéphane Joost

Since the initation of the Global plan of action for Farm Animal Genetic Resources (FAnGR) in 2007, individual member countries, including Switzerland, should have started a monitoring program. In this context, we developed GenMon-CH, funded by the Federal ...

2017

High performance computation of landscape genomic models including local indicators of spatial association

Stéphane Joost, Sylvie Stucki, Pierre Taberlet

With the increasing availability of both molecular and topo-climatic data, the main challenges facing landscape genomics — i.e. the combination of landscape ecology with population genomics — include processing large numbers of models and distinguishing be ...

Wiley-Blackwell2017

Networks on Chips: 15 Years Later

Giovanni De Micheli, Luca Benini

The authors of a Computer article from 2002 reflect on their proposal to use networks on chips to address scalable communications on silicon VLSI chips. ...

2017

Open computational landscape genetics

Stéphane Joost, Estelle Rochat, Ivo Widmer

Geographical Information Systems (GIS) are considered to be applications-led technology. Consequently, geographic information scientists commonly find themselves as guest in host disciplines in order to best exploit spatial analysis tools and methods, appr ...

2016

Advances in farm animal genomic resources

Stéphane Joost

The history of livestock started with the domestication of their wild ancestors: a restricted number of species allowed to be tamed and entered a symbiotic relationship with humans. In exchange for food, shelter and protection, they provided us with meat, ...

Frontiers2016

Proximity Operators for Phase Retrieval

Michaël Unser, Frédéric Courbin, Ferréol Arnaud Marie Soulez

We present a new formulation of a family of proximity operators that generalize the projector step for phase retrieval. These proximity operators for noisy intensity measurements can replace the classical "noise-free" projection in any projection-based alg ...

OSA2016

Multi-scale landscape genomic models

Kevin Leempoel

Environmental heterogeneity is one of the main actors of biodiversity and species adaptation as it exerts a selective pressure on observable characteristics of living organisms. Consequently, local adaptation favours certain genetic variants and, by doing ...

EPFL2015

Complex pattern projection through a multimode fiber

Demetri Psaltis, Christophe Moser, Damien Claude-Marie Loterie, Salma Farahi

Wavefront shaping through multimode fibers has many interesting applications, such as micromanipulation and endoscopy, where the small diameter of fibers is an advantage in terms of miniaturization. However, pattern projection can suffer from deleterious i ...

Spie-Int Soc Optical Engineering2015

Biogeoinformatics of livestock genomic resources

Stéphane Joost

In 2008, FAO and WAAP published a report on production environment descriptors for animal genetic resources. One of the main conclusions was that it was necessary to quickly systematize the recording of breeds’ geographical coordinates worldwide in order t ...

2014