Development of an interactive genome browser to visualize and analyse large scale genomic data
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In this paper we consider piecewise affine models of genetic regulatory networks proposed by Glass and Kaufmann in the 70's and discuss a method for their identification. These systems have specific features that must be preserved by the identification pro ...
There is great interindividual variability in HIV-1 viral setpoint after seroconversion, some of which is known to be due to genetic differences among infected individuals. Here, our focus is on determining, genome-wide, the contribution of variable gene e ...
Human RNA polymerase (Pol) III-transcribed genes are thought to share a simple termination signal constituted by four or more consecutive thymidine residues in the coding DNA strand, just downstream of the RNA 3'-end sequence. We found that a large set of ...
Copy-number variants (CNVs) form an abundant class of genetic variation with a presumed widespread impact on individual traits. While recent advances, such as the population-scale sequencing of human genomes, facilitated the fine-scale mapping of CNVs, the ...
Due to daylight variability, a design cannot be thoroughly assessed using single-moment simulations, which is why we need dynamic performance metrics like Daylight Autonomy and Useful Daylight Illuminance. Going one step further, the annual variation in pe ...
We present a visualization framework for exploring and analyzing data sets from biomechanical and neuromuscular simulations. These data sets describe versatile information related to the different stages of a motion analysis. In studying these data using a ...
The Microbe browser is a web server providing comparative microbial genomics data. It offers comprehensive, integrated data from GenBank, RefSeq, UniProt, InterPro, Gene Ontology and the Orthologs Matrix Project (OMA) database, displayed along with gene pr ...
Measurement system configuration is an important task in structural health monitoring in that decisions influence the performance of monitoring systems. This task is generally performed using only engineering judgment and experience. Such approach may resu ...
Exploratory data analysis, or EDA for short, is a term coined by John W. Tukey for describing the act of looking at data to see what it seems to say. This article gives a description of some typical EDA procedures and discusses some of the principles Of ED ...
The genetic diversity of cyanobacterial communities was studied at various depths in Lake Kinneret (Israel). Denaturing gradient gel electrophoresis (DGGE) of specific 16S rRNA gene PCR products showed significant differences in the cyanobacterial communit ...