Thermodynamics of the Segregation of a Kinetically Trapped Two-Dimensional Amorphous Metal-Organic Network

Surface-confined self-assembled molecular networks are commonly described as crystalline structures with short- and long-range order. Few exceptions to this trend are found in the literature reporting on amorphous and glassy networks and, discussing the origins of their disordered nature at the atomic, scale. Here, we show that an amorphous two component metal-organic network can be synthesized on a crystalline metal surface at room temperature by vapor deposition of organic molecules and metal atoms. Scanning tunneling microscopy reveals the transformation of a crystalline close packed organic layer into a disordered porous layer formed through the self-assembly of an organic semiconductor functionalized with two cyano groups upon introduction of iron atoms on Ag(111). In contrast to the commonly observed preference for trigonal crystal symmetry in 2D systems that form, glassy networks, our metal organic network favors rhombic or square tessellation of the surface. Statistical analysis of the network's morphology reveals that entropy plays a critical part in its stabilization. Phase segregation of the binary mixture of monodisperse metal atoms and organic molecules into spatially separate homogeneously crystalline domains of molecules and metal atoms upon thermal annealing and subsequent cooling is observed. This suggests that the amorphous network is kinetically trapped at room temperature during the preparation process.

On-Surface Assembly and Reactions of Organic Molecules in Ultra-High Vacuum

Claudius Morchutt

This thesis comprises the study of two types of 2D materials, those stabilized by non-covalent and those by covalent interactions. They are synthesized and studied on well-defined metallic surfaces in ultra-high vacuum (UHV). The self-assembly of terephthalic acid (TPA) on Ag(100) is explored. TPA stays intact upon deposition at room temperature (RT) and forms islands stabilized by hydrogen bonds. TPA islands influence the homoepitaxial growth of silver and reduce the sticking coefficient of Ag atoms. At RT Ag atoms intercalate TPA islands which are not disrupted. In contrast, TPA molecules in conjunction with Mg atoms on Ag(100) results in tip-induced altering of the surface. The electric field between tip and sample interacts with Mg atoms and TPA, which leads to a restructuring of the step-edges during scanning. Moreover, the self-assembly of the organic semiconductor 2,7-dicyano[1]benzothiene[3,2-b]benzothiophene (cBTBT) on Ag(111) at RT is presented. The pro-chiral molecules form compact islands with a chevron-like structure containing both enantiomers. Deposition of Fe atoms leads to an amorphous metal-organic coordination network (MOCN). Statistical analysis reveals that conformational entropy plays a critical part in its stabilization. Phase segregation into spatially homogeneously crystalline domains of molecules and metal atoms upon annealing suggests that the amorphous network is kinetically trapped at RT during the preparation process. The second part presents the on-surface synthesis of 2D polymers via different coupling schemes. First, the Ullmann coupling on Au(111) is explored. The molecule 1,3,5-tris(4-bromophenyl)benzene (TBPB) debrominates upon annealing and polyphenylene is formed. To investigate the influence of metal substrates on the dehalogenation, a single layer of hexagonal boron nitride as well as graphene grown on Ni(111) is introduced. On both surfaces TBPB forms self-assembly islands stabilized by halogen bonds, while on bare Ni(111) the substrate-molecule interaction dominates resulting in structures without long-range order. Upon annealing on both surfaces dehalogenation is induced and 2D nanostructures are formed. On bare Ni(111) the precursor molecules merely decompose. The experimental annealing temperatures are consistent with debromination barriers calculated by DFT. An example of the synthesis of tailor-made 2D structures by using particularly designed precursor molecules is also given. A terminal alkyne with a triazine core undergoes on-surface Glaser coupling and cyclotrimerization on Au(111) resulting in nitrogen doped 2D polymers. Finally, a comprehensive study of the on-surface decarboxylation reaction of 1,3,5-tris(4-carboxyphenyl)benzene (TCPB) on Cu(111) is presented. TCPB deprotonates upon deposition on Cu(111) at RT and self-assembles in compact islands. The self-assembly is stabilized by ionic hydrogen bonds between deprotonated and negatively charged oxygen atoms and hydrogen atoms of neighboring molecules. Annealing leads to decarboxylation and formation of 2D nanostructures. The reaction occurs in a clean fashion because CO2 leaves the surface. In addition, STS reveals that the lowest unoccupied molecular orbital (LUMO) of the 2D polymer is destabilized compared to the LUMO of the monomer although the pi-electron system is more extended in the polymer. The decarboxylation impacts the energy position of the LUMO to a greater extend which is corroborated by DFT calculations.

EPFL2016

Electronic and magnetic interactions in single molecular and atomic contacts

Verena Katharina Schendel

This thesis encompasses an investigation of organic molecules on metallic substrates as well as a study of electronic and magnetic effects in atomic-sized palladium contacts. For this, a scanning tunneling microscope, operating at 6 K and ultra-high vacuum is used. The clean environment allows characterization of single molecules and atoms under well-defined conditions. Moreover, by examining at low-temperatures it is possible to study electronic and magnetic effects spectroscopically, which would otherwise be thermally obscured. The first part of this thesis focuses on studying organic molecules absorbed on metallic substrates. The molecules under investigation are thiophene derivatives of the archetypical organic semiconductor pentacene. The thiophene derivatives, tetracenothiophene (TCT) and anthradithiophene (ADT), contain either one or two thiophene groups at the terminal benzene rings. The dependence of the deposition temperature as well as the impact of different metallic substrates on their adsorption behavior is studied. When depositing the molecules on a Au substrate at room temperature, the molecules stay fully intact. In contrast, when deposited onto a Cu substrate, a breaking of the thiophene entity is observed. The breaking can be prevented by cooling the substrate to 200 K during deposition. Conductance measurements on the TCT molecules with an intact and broken thiophene entity reveal differences in their transport characteristics. The intact ones exhibit lower conductances than the broken ones. This can essentially be attributed to the fact that the latter ones bind covalently to the substrate, which facilitates transport. ADT deposited on Cu(111) can be reversibly and repeatedly interconverted between two distinct adsorption congurations associated with different conductances, and thus has been investigated as a molecular switch. The switching mechanism is related to a change between two different bonding configurations of the molecule to the substrate. The non-switched state ("off") can be ascribed to a strongly bound state and the switched state ("on") to a weaker bound configuration. The switching process is not only restricted to the location beneath the tip but also can be initiated within an extended area of about 100 nm in radius. This long-ranged addressing is enabled by means of surface state carriers of the Cu(111) surface. The non-local switching process is fully reversible, isomer selective and efficient over radial distances of about 100 nm. The second part of this work examines atomic-sized palladium (Pd) contacts. Pd exhibits outstanding properties owing to its high density of states (DOS) at the Fermi level. This renders Pd a "nearly ferromagnetic" material. Upon size confinement the DOS can be pushed to higher values and Pd can develop a net magnetization. Transport measurements were carried out for two distinct contact geometries; a tip-adatom and and a tip-surface contact geometry. Whereas for the tip-adatom contacts no magnetic state can be detected, measurements conducted for the tip-surface geometry might indicate the presence of a magnetic moment. The differences are attributed to the adsorption configuration of the single bridging atom in the junction. Spectra taken in point-contact with an adatom reveal a distinct inverted V-shaped feature. Presently we attribute this feature to paramagnons.

EPFL2015

Single-molecule-level characterization of supramolecular systems at surfaces

Dietmar Payer

This thesis deals with the self-organization of individual building blocks, specifically organic molecules and metal atoms, into supramolecular structures on metal surfaces under ultra high vacuum conditions (UHV). Self-organization of supramolecular systems is a promising candidate for a bottom-up approach in the fabrication of complex structures with specific properties. This process is steered by interactions between functional groups of the individual building blocks and is of apparent interest to gain a detailed understanding of the influence and the behavior of these functional groups enabling intermolecular binding. In the first part of the thesis, we investigate hydrogen bonded structures on metal surfaces. Of especial interest is the possibility of the formation of ionic hydrogen bonds, a special class of hydrogen bond which connects a charged donor (acceptor) and a neutral acceptor (donor) and is important in biological systems. By combined Scanning Tunneling Microscopy (STM), X-ray Photoelectron Spectroscopy (XPS) and Near Edge X-ray Absorption Fine Structure (NEXAFS) measurement we show the deprotonation of carboxylic functions in the molecules, forming carboxylate groups involved in intermolecular binding. With our complementary experimental and theoretical examinations we clearly show that the carboxylate groups are indeed still charged although adsorbed onto a conducting metal surface and that the observed structures can be computationally reproduced by using these charges in classical molecular dynamic calculations. Our investigations clearly reveal that all requirements for the formation of ionic hydrogen bonds in these samples at metal surfaces under solvent free conditions are fulfilled. In the second part, the confinement of surface state electrons in self-assembled hydrogen-bonded structures is investigated. The examined structure contains two-dimensional cavities, with different inner diameters in the periodic arrangement and in domain boundaries. Inside the cavities we detect a spatially localized modification in the local density of states (LDOS) of the Ag(111) surface state electrons. The energy of the peak correlates with the cavity area as predicted by a simple "particle in a box" model. This clearly shows that the surface state electrons form a confined state inside the cavities. Furthermore we examine self-assembled periodic structures as templates for binding single macrocyclic molecules. The macrocyclic molecules can be deposited by sublimation, as STM-topographs with submolecular resolution reflect the shape of the intact molecules and reveal a coverage dependent aggregation behavior. We show that it is possible to fabricate a structure in which at most one macrocyclic molecule per pore can be found in a defined binding position. In the last part of the thesis we investigate the influence of individual metal atoms on the chemical activity and the self-assembly process of molecules on metal surfaces. First, we demonstrate the high chemical reactivity of these metal atoms. In our experiments we address the chemical reactivity of static active sites, like kinks and step edges, and of dynamic active sites, like the metal atoms, separately. Doing this we show that a non-negligible amount of the chemical reactivity of a metal surface is due to this dynamic adatom gas. Furthermore the influence of metal atoms on the structure formation of organic molecules is investigated. We show that two-dimensional structures based on a complex formation between metal centers and ligands can be formed and that the coordination number is independent of the substrate symmetry. Furthermore, we show the possibility that on metal surfaces one can prepare three-fold coordinated Fe-centers, a coordination number which is rarely seen in three dimensional chemistry. In the last part we study catenanes, which consist of two interlocked macrocyclic molecules. Main interest is on the confirmation of a structural change of the catenanes adsorbed on a metal substrate. For our experiments we use the fact that the catenanes are designed to "trap" a Cu-atom by complex formation. As this reaction is associated with a structural change and a change in intermolecular interaction, we can verify a reaction of catenanes adsorbed onto a surface with Cu adatoms and therefore a structural alteration by simply imaging the formed structures. Our measurements show the possibility of depositing large molecules like catenanes by sublimation and of their potential for use as molecular machines adsorbed onto metal surfaces.

EPFL2007