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High level synthesis of Smith-Waterman dataflow implementations

Publications associées (47)

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FPGAs for the Masses: Affordable Hardware Synthesis from Domain-Specific Languages

Nithin George

Field Programmable Gate Arrays (FPGAs) have the unique ability to be configured into application-specific architectures that are well suited to specific computing problems. This enables them to achieve performances and energy efficiencies that outclass oth ...

EPFL2016

Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server

Matteo Dal Peraro, Luciano Andres Abriata, Christophe Bovigny

Background: Protein variability can now be studied by measuring high-resolution tolerance-to-substitution maps and fitness landscapes in saturated mutational libraries. But these rich and expensive datasets are typically interpreted coarsely, restricting d ...

Biomed Central Ltd2016

In recent years the computing landscape has seen an increasing shift towards specialized accelerators. Field programmable gate arrays (FPGAs) are particularly promising for the implementation of these accelerators, as they offer significant performance and ...

Assoc Computing Machinery2016

High-level synthesis of dataflow programs for heterogeneous platforms

Endri Bezati

The growing complexity of digital signal processing applications implemented in programmable logic and embedded processors make a compelling case the use of high-level methodologies for their design and implementation. Past research has shown that for comp ...

EPFL2015

Automated Design Flow for Multi-Functional Dataflow-Based Platforms

Marco Mattavelli, Simone Casale Brunet, Endri Bezati

The implementation of processing platforms supporting multiple applications by runtime reconfigurations on dedicated hardware modules requires the solution of different problems. These problems are notably not-trivial since both platform and application co ...

Springer Verlag2015

Operation and Control of Single-to-Three-Phase Direct AC/AC Modular Multilevel Converters under Asymmetric Grid Conditions

Alfred Rufer, Michail Vasiladiotis, Nicolas Cherix

Single-to-three-phase direct AC/AC Modular Multilevel Converters have gained a significant interest in the field of railway interties. The use of such an MMC-based structure implies more advanced control techniques as well as design requirements, especiall ...

2015

This paper presents the hardware-in-the-loop (HIL) validation of a proposed FPGA-based real-time simulator for power electronics applications. The proposed FPGA-based real-time simulation platform integrates the Modified Nodal Analysis (MNA) method, Fixed ...

ipst.org2015

High-level dataflow design of signal processing systems for reconfigurable and multicore heterogeneous platforms

Marco Mattavelli, Endri Bezati, Ghislain Roquier, Richard Thavot

The potential computational power of today multicore processors has drastically improved compared to the single processor architecture. Since the trend of increasing the processor frequency is almost over, the competition for increased performance has move ...

Springer Heidelberg2014

This paper describes the dynamics of capillary self-alignment of components with initial shift offsets from matching receptor sites. The analysis of the full uniaxial self-alignment dynamics of foil-based mesoscopic dies from pre-alignment to final settlin ...

Springer2014

Performance of the LHCb muon system

Guido Haefeli, Giovanni Carboni

The performance of the LHCb Muon system and its stability across the full 2010 data taking with LHC running at root s = 7 TeV energy is studied. The optimization of the detector setting and the time calibration performed with the first collisions delivered ...

Institute of Physics2013