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Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells
Publications associées (55)
Live-cell imaging powered by computation
The proliferation of microscopy methods for live-cell imaging offers many new possibilities for users but can also be challenging to navigate. The prevailing challenge in live-cell fluorescence microscopy is capturing intra-cellular dynamics while preservi ...
Berlin2024Orchestrating chromosome conformation capture analysis with Bioconductor
Genome-wide chromatin conformation capture assays provide formidable insights into the spatial organization of genomes. However, due to the complexity of the data structure, their integration in multi-omics workflows remains challenging. We present data st ...
2024Hausdorff dimension of fermions on a random lattice
Geometric properties of lattice quantum gravity in two dimensions are studied numerically via Monte Carlo on Euclidean Dynamical Triangulations. A new computational method is proposed to simulate gravity coupled with fermions, which allows the study of int ...
Elsevier2024EncodingActs: Modeling, Representing and Transmitting Embodied Knowledge in Traditional Martial Arts
EncodingActs investigates how computational methods can facilitate the transmission of multifaceted knowledge within intangible cultural heritage (ICH). ICH, characterized by living, tacit, yet complex epistemic systems, is conventionally viewed as challen ...
EPFL2024From Automated Bootstrapping to Collaborative Editing: A Framework for 4D City Reconstruction
Rémi Guillaume Petitpierre, Paul Robert Guhennec, Beatrice Vaienti, Didier Louis Dupertuis
We propose a framework for the construction of 4D scientific models for cities of the past. It leverages both the use of computational methods for bootstrapping, and a collaborative interface for visualisation and edition. This permits to continuously enri ...
Zenodo2023An Industrial West? Analyzing Multilingual Newspapers Discourses about Technology during the Second Industrial Revolution (1840-1930)
While the idea of technology as a driving force of history and society has been extensively studied in the history of the Industrial Revolutions, little attention has been paid to the social perception of those technologies. This thesis focuses on the disc ...
20233DHumanGAN: 3D-Aware Human Image Generation with 3D Pose Mapping
We present 3DHumanGAN, a 3D-aware generative adversarial network that synthesizes photo-like images of fullbody humans with consistent appearances under different view-angles and body-poses. To tackle the representational and computational challenges in sy ...
Ieee Computer Soc2023Computational tools and resources for designing new pathways to small molecules
Vassily Hatzimanikatis, Anastasia Sveshnikova
The metabolic engineering community relies on computational methods for pathway design to produce important small molecules in microbial hosts. Metabolic network databases are continuously curated and updated with known and novel reactions that expand the ...
CURRENT BIOLOGY LTD2022A Champion for Chemistry: Elements of Jim Morgan's Intellectual Legacy
James (Jim) Morgan was a leading figure in the field of environmental science and engineering. He championed the application of chemistry in the study of the environment and the design and optimization of environmental treatment processes. Jim influenced t ...
AMER CHEMICAL SOC2021Comparison of computational methods for the electrochemical stability window of solid-state electrolyte materials
Aris Marcolongo, Matthieu Gilles Mottet
Superior stability and safety are key promises attributed to all-solid-state batteries (ASSBs) containing solid-state electrolyte (SSE) compared to their conventional counterparts utilizing liquid electrolyte. To unleash the full potential of ASSBs, SSE ma ...
ROYAL SOC CHEMISTRY2020