Concept
Sequence analysis
Related publications (256)
Data-Driven Movement Subunit Extraction from Skeleton Information for Modeling Signs and Gestures
Marzieh Razavi, Sandrine Tornay
Sequence modeling for signs and gestures is an open research problem. In thatdirection, there is a sustained effort towards modeling signs and gestures as a se-quence of subunits. In this paper, we develop a novel approach to infer movementsubunits in a da ...
Idiap2019Identifying microbial species by single-molecule DNA optical mapping and resampling statistics
Theo Lasser, Aleksandra Radenovic, Arno Pino Bouwens, Tomas Lukes, Adrien Charles-François Raymond Descloux, Kristin Stefanie Grussmayer, Jochem Deen
Single-molecule DNA mapping has the potential to serve as a powerful complement to high-throughput sequencing in metagenomic analysis. Offering longer read lengths and forgoing the need for complex library preparation and amplification, mapping stands to p ...
2019Eliminating Exposure Bias and Metric Mismatch in Multiple Object Tracking
Identity Switching remains one of the main difficulties Multiple Object Tracking (MOT) algorithms have to deal with. Many state-of-the-art approaches now use sequence models to solve this problem but their training can be affected by biases that decrease t ...
IEEE2019A local discontinuous Galerkin gradient discretization method for linear and quasilinear elliptic equations
Assyr Abdulle, Giacomo Rosilho De Souza
A local weighted discontinuous Galerkin gradient discretization method for solving elliptic equations is introduced. The local scheme is based on a coarse grid and successively improves the solution solving a sequence of local elliptic problems in high gra ...
EDP SCIENCES S A2019MeCP2-E1 isoform is a dynamically expressed, weakly DNA-bound protein with different protein and DNA interactions compared to MeCP2-E2
Background: MeCP2-a chromatin-binding protein associated with Rett syndrome-has two main isoforms, MeCP2-E1 and MeCP2-E2, differing in a few N-terminal amino acid residues. Previous studies have shown brain region-specific expression of these isoforms whic ...
2019MRI T2 Mapping of the Knee Providing Synthetic Morphologic Images: Comparison to Conventional Turbo Spin-Echo MRI
Background: Use of a T2 mapping sequence in addition to the conventional knee MRI protocol increases sensitivity to early cartilage lesions but is time consuming. Purpose: To test the in vitro validity of quantitative data from an accelerated parallel T2 m ...
RADIOLOGICAL SOC NORTH AMERICA2019The Detection of Early Epigenetic Inheritance of Mitochondrial Stress in C. Elegans with a Microfluidic Phenotyping Platform
Johan Auwerx, Martinus Gijs, Matteo Cornaglia, Hüseyin Baris Atakan
Fluctuations and deterioration in environmental conditions potentially have a phenotypic impact that extends over generations. Transgenerational epigenetics is the defined term for such intergenerational transient inheritance without an alteration in the D ...
2019Multimodal imaging and high-throughput image-processing for drug screening on living organisms on-chip
Michaël Unser, Johan Auwerx, Martinus Gijs, Matteo Cornaglia, Laurent Mouchiroud, Daniel Migliozzi, Virginie Sophie Uhlmann
A major step for the validation of medical drugs is the screening on whole organisms, which gives the systemic information that is missing when using cellular models. Caenorhabditis elegans is a soil worm that catches the interest of researchers who study ...
2019Inferring interaction partners from protein sequences using mutual information
Anne-Florence Raphaëlle Bitbol
Functional protein-protein interactions are crucial in most cellular processes. They enable multi-protein complexes to assemble and to remain stable, and they allow signal transduction in various pathways. Functional interactions between proteins result in ...
2018Evaluating the similarity of biochemical reactions and its uses for mapping novel and orphan reactions to protein sequences
Recent advances in synthetic biochemistry have resulted in a wealth of de novo hypothetical enzymatic reactions that are not matched to protein-encoding genes, deeming them “orphan”. Nearly half of known metabolic enzymes are also orphan, leaving important ...
2018