Molecular dynamics under constraints

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Molecular Dynamics Simulations: Energy Conservation

Explores energy conservation in Hamiltonian systems, numerical integration, time step choices, and constraint algorithms in molecular dynamics simulations.

Constraints and Lagrange

Covers constraints, Lagrange equations, generalized coordinates, cyclic coordinates, conservation laws, and Hamilton formalism.

Thermodynamics in Cell Biology

Explores the role of thermodynamics in cell biology, focusing on the connection between thermodynamics and cellular processes.

Molecular Dynamics and Monte Carlo: Computational Environment

Covers the computational environment for Molecular Dynamics and Monte Carlo exercises, emphasizing theoretical understanding over coding skills.

Path Integral Methods: Efficient Energy Estimators

Covers advanced path integral methods for deriving efficient energy estimators in molecular dynamics simulations.

Classical Molecular Dynamics: Simulation and Integration Algorithms

Explores classical molecular dynamics simulations, integration algorithms, and trajectory accuracy.

Thermodynamic Transformations and Entropy

Explores thermodynamic transformations of ideal gases, heat capacity, entropy, and adiabatic processes.

Ball Rolling on Hemisphere

Analyzes the motion of a ball on a hemisphere surface with forces and equations of motion.

Quantum to Classical Mechanics: MD & MC Simulations

Covers Molecular Dynamics and Monte Carlo Simulations, transitioning from Quantum to Classical Mechanics in computational chemistry.

Structures and Mechanisms: Static (Rigid) Structures

Covers the analysis of static (rigid) structures, including equilibrium and free-body diagrams.