Publications related to NEURON and Python

Periodic and aperiodic NiFe nanomagnet/ferrimagnet hybrid structures for 2D magnon steering and interferometry with high extinction ratio

Dirk Grundler, Sho Watanabe, Andrea Mucchietto, Shixuan Shan, Elif Nur Dayi, Vinayak Shantaram Bhat

File formats are described in read_me files in the concerning folder. For plotting and data evaluation, Python 2.7 was used. Example scripts for plotting are provided. ...

Zenodo2023

Dataset for the publication "Reversal of nanomagnets by propagating magnons in ferrimagnetic yttrium iron garnet enabling nonvolatile magnon memory"

Dirk Grundler, Korbinian Baumgärtl

Raw data associated to the manuscript ‘’Reversal of nanomagnets by propagating magnons in ferrimagnetic yttrium iron garnet enabling nonvolatile magnon memory‘’, Nature Communications (2023); doi: https://doi.org/10.1038/s41467-023-37078-8 Information abou ...

Zenodo2023

ms3: A parser for MuseScore files, serving as data factory for annotated music corpora

Martin Alois Rohrmeier, Johannes Hentschel

The Python library ms3 makes scores (symbolic representations of music) operational for computational approaches by representing their contents as sets of tabular files. Music scores represent relations between sounding events by graphical means. The Free ...

2023

Principles of Network Plasticity in Neocortical Microcircuits

András Ecker

Synaptic plasticity underlies our ability to learn and adapt to the constantly changing environment. The phenomenon of synapses changing their efficacy in an activity-dependent manner is often studied in small groups of neurons in vitro or indirectly throu ...

EPFL2023

From event-based surprise to lifelong learning. A journey in the timescales of adaptation

Martin Louis Lucien Rémy Barry

Humans and animals constantly adapt to their environment over the course of their life. This thesis seeks to integrate various timescales of adaptation, ranging from the adaptation of synaptic connections between spiking neurons (milliseconds), rapid behav ...

EPFL2023

Simple automation of SEM-EDS spectral maps analysis with Python and the edxia framework

Karen Scrivener, Fabien Jacques Michel Georget, William Wilson

In a recent article, we described the edxia framework, a user-friendly framework to analyse the microstructure of cementitious materials using SEM-EDS hypermaps. The manual approach presented was shown to be efficient to answer the relevant scientific ques ...

WILEY2022

Data-driven whole mouse brain modeling for multi-scale simulations

Dimitri Bruno Marie Rodarie

In this thesis, we present a data-driven iterative pipeline to generate, simulate and validate point-neuron models of the whole mouse brain. The ultimate goal is to replicate close loop experiments with a virtual body in a virtual world. This pipeline was ...

EPFL2022

A universal workflow for creation, validation and generalization of detailed neuronal models

Henry Markram, Srikanth Ramaswamy, Mustafa Anil Tuncel, Werner Alfons Hilda Van Geit, Alexis Arnaudon, Christian Andreas Rössert, Maria Reva, Tanguy Pierre Louis Damart, Darshan Mandge

Detailed single neuron modeling is widely used to study neuronal functions. While cellular and functional diversity across the mammalian cortex is vast, most of the available computational tools are dedicated to the reproduction of a small set of specific ...

Cambridge2023

Timing is Everything

Karen Adam

In this thesis, timing is everything. In the first part, we mean this literally, as we tackle systems that encode information using timing alone. In the second part, we adopt the standard, metaphoric interpretation of this saying and show the importance of ...

EPFL2022

The EBRAINS Hodgkin-Huxley Neuron Builder: An online resource for building data-driven neuron models

Jean-Denis Georges Emile Courcol, Michele Migliore, Genrich Ivaska, Carmen Alina Lupascu, Luca Leonardo Bologna, Shailesh Appukuttan

In the last decades, brain modeling has been established as a fundamental tool for understanding neural mechanisms and information processing in individual cells and circuits at different scales of observation. Building data-driven brain models requires th ...

FRONTIERS MEDIA SA2022