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A motif is a frequently occurring subgraph of a given directed or undirected graph G (Milo et al.). Motifs capture higher order organizational structure of G beyond edge relationships, and, therefore, have found wide applications such as in graph clusterin ...
The Python library ms3 makes scores (symbolic representations of music) operational for computational approaches by representing their contents as sets of tabular files. Music scores represent relations between sounding events by graphical means. The Free ...
In yeast, ribosome production is controlled transcriptionally by tight coregulation of the 138 ribosomal protein genes (RPGs). RPG promoters display limited sequence homology, and the molecular basis for their coregulation remains largely unknown. Here we ...
Cognitive functions are stored in the connectome, the wiring diagram of the brain, which exhibits non-random features, so-called motifs. In this work, we focus on bidirectional, symmetric motifs, i.e. two neurons that project to each other via connections ...
A flexible motif search technique is presented which has two major components: (1) a generalized profile syntax serving as a motif definition languaje; and (2) a motif search method specifically adapted to the problem of finding multiple instances of a mot ...
The isoniazid susceptibility of Mycobacterium tuberculosis is mediated by the product of the katG gene which encodes the heme-containing enzyme catalase-peroxidase. In this study, the chromosomal location of katG has been established and its nucleotide seq ...
