Interaction biologique | EPFL Graph Search

vignette|Diagramme simplifié des six principales interactions biologiques. Une interaction biologique, appelée aussi interaction biotique ou interaction écologique, désigne un processus impliquant des échanges ou relations réciproques entre plusieurs individus ou espèces dans un écosystème (relations interspécifiques), ou entre deux ou plusieurs individus d'une même population (relations intraspécifiques). Ces interactions, bénéfiques, neutres ou néfastes, instantanées ou durables, obligatoires (strictes), facultatives, opportunistes ou accidentelles selon leur niveau de spécificité, peuvent engendrer des coévolutions, induites directement (par exemple dans une relation prédateur-proie) ou indirectement (par exemple l'accès à une ressource commune) par ces échanges. On parlera alors d’interactions directes ou indirectes. Il existe toute une gradation de relations, rendant les individus plus ou moins interdépendants, en fonction du degré d'association des organismes impliqués, de la d

Proteins interacting with PfEMP1 in P. falciparum infected erythrocyte

Damien Jacot

During infection in humans, P. falciparum invades and refurbishes the red blood cells (RBCs) in order to persist and proliferate. Parasite survival depends on expression of a parasite encoded cytoadherence ligand at the surface of the infected RBC called PfEMP1 (P. falciparum erythrocyte membrane protein 1). PfEMP1 comprises a N-terminal extracellular part, which mediates binding to receptors at the host endothelium. It also contains a C-terminal part which is conserved among all PfEMP1 molecules. This acidic terminal segment (ATS) anchors PfEMP1 to the membrane of infected RBCs and has a role for trafficking. To bring proteins to the RBC surface, P. falciparum builds its own trafficking machinery de novo since the erythrocytes do not contain secretory organelles. These new structures include parasite derived compartments called Maurer's clefts (MCs) located at the RBC periphery. The resident MCs protein MAHRP1 (membrane-associated histidine-rich protein 1) has been shown to be critical for PfEMP1 trafficking. A MAHRP1 KO strain had no PfEMP1 on the RBC surface but accumulated PfEMP1 within the parasite. MAHRP1 is a 28.9kDa protein with 249 amino acids containing a N-terminal, a transmembrane, and a C-terminal domain comprising histidine-rich repeats. To re-establish PfEMP1 trafficking, the MAHRP1 KO parasite line was complemented with various truncated HA-tagged fragments of MAHRP1. Immunofluorescent assays (IFAs) showed that the Cterminal domain with the histidine-rich repeats was not essential for PfEMP1 trafficking.

{MAHRP1}_{1-130}

and

{MAHRP1}_{1-169}

were exported to MCs and restored trafficking of PfEMP1. Shorter MAHRP1 fragments were not exported to MCs and PfEMP1 transport remained impaired. New transfection constructs were designed including the C-terminal part to identify important domain(s) of MAHRP1 for PfEMP1 trafficking. To identify other proteins interacting with PfEMP1, the ATS domain of PfEMP1 was recombinantly expressed and used in pull-down experiments. In these experiments using parasite lysates, PF14_0377 was identified as a potential interaction partner. This protein has been described as putative, vesicular-associated membrane protein. To subsequently assess the interaction(s) and the localization(s), PF14_0377 was cloned and transfected in 3D7 for IFAs. Due to time restrictions all these new transfectants could not be analyzed completely

2009

Beyond the patch: on landscape-explicit metapopulation dynamics

Jonathan Giezendanner

Climate change threatens biodiversity and species distribution all over the world at unprecedented rates. Human induced changes to landscape structure and habitat are redefining the relation between species and their environment. Understanding, characterizing and modeling the relation between complex landscape features and geographical species presence, the subject of this thesis, have thus gained paramount importance in order to make informed decisions on near- and far-term management strategies for species and landscape protection. The present thesis pays particular attention to the understanding of how mountain landscapes, described as heterogeneous habitat matrices, govern the presence of a species in space and time. To this end, throughout this thesis a metapopulation model is considered, a spatially-explicit model based on the balance between colonization and extinction events in areas of different suitability. The classical patch-based modelling approach is extended here in various ways in order to incorporate landscape-explicit information about the habitat matrix. A first theoretical study is performed on geometric, realistic, and real landscapes which highlights how different levels of connectivity, the degree to which different areas of similar habitat are actually linked together in the landscape (say, derived from geomorphic structures, such as valleys and peaks or emerging structures shaped by fluvial erosion and tectonic uplift) impact the dynamic of mountain species under climate change. A second, applied, study investigates how different landscape descriptors derived from Earth Observation data can be used in order to dynamically model the spatial, landscape-explicit, presence of two carabid species (Pterostichus flavofemoratus and Carabus depressus) in the Gran Paradiso National Park. In a final study, the consistency of the metapopulation model is investigated when considering different resolutions of the landscape matrix, i.e. different levels of coarse-graining. This last part is fundamental to the understanding of how conclusions drawn from local studies can be made general and extrapolated to larger regions. Overall, this thesis bridges the fields of population and landscape ecology, focusing on modelling metapopulation dynamics in complex landscapes seen as the substrate for ecological interactions. The result from the three studies show that metapopulation ecology can profit from the insights of landscape ecology. The combination of the two fields can be a useful tool in furthering the understanding and monitoring of mountain species.

EPFL2020