Fruit tree propagation is usually carried out vegetatively (non-sexually) by grafting or budding a desired variety onto a suitable rootstock.
Perennial plants can be propagated either by sexual or vegetative means. Sexual reproduction begins when a male germ cell (pollen) from one flower fertilises a female germ cell (ovule, incipient seed) of the same species, initiating the development of a fruit containing seeds. Each seed, when germinated, can grow to become a new specimen tree. However, the new tree inherits characteristics of both its parents, and it will not grow true to the variety of either parent from which it came. That is, it will be a fresh individual with an unpredictable combination of characteristics of its own. Although this is desirable in terms of producing novel combinations from the richness of the gene pool of the two parent plants (such sexual recombination is the source of new cultivars), only rarely will the resulting new fruit tree be directly useful or attractive to the tastes of humankind. Most new plants will have characteristics that lie somewhere between those of the two parents.
Therefore, from the orchard grower or gardener's point of view, it is preferable to propagate fruit cultivars vegetatively in order to ensure reliability. This involves taking a cutting (or scion) of wood from a desirable parent tree which is then grown on to produce a new plant or "clone" of the original. In effect this means that the original Bramley apple tree, for example, was a successful variety grown from a pip, but that every Bramley since then has been propagated by taking cuttings of living matter from that tree, or one of its descendants.
The simplest method of propagating a tree vegetatively is rooting or taking cuttings. A cutting (usually a piece of stem of the parent plant) is cut off and stuck into soil. Artificial rooting hormones are sometimes used to improve chances of success. If the cutting does not die from rot-inducing fungi or desiccation first, roots grow from the buried portion of the cutting to become a new complete plant.
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thumb|Greffe en fente sur un cerisier. thumb|Greffe de pommier après un mois. vignette|Trois hêtres s'anastomosent via leur tronc.Ster (Stavelot), Belgique. En agriculture, le greffage est un mode de reproduction végétative qui consiste à implanter dans les tissus d'une plante (nommée « porte-greffe ») un bourgeon ou un fragment quelconque (nommé « greffon »), prélevé sur une autre plante ou de la même plante, pour que celui-ci continue à croître en faisant corps avec la première. Le résultat de cette opération est nommé la greffe.
Un porte-greffe ou hypobiote, en agriculture, est une plante ligneuse ou herbacée décapitée pourvue d'un système racinaire sur laquelle on implante un greffon ou épibiote dans le but d'effectuer un greffage. Selon les cas, ce peut-être un clone, provenant de la multiplication végétative (bouturage, marcottage...) ou bien d’un semis qui peut-être issu d'un croisement spontané. Dans ce dernier cas, en arboriculture fruitière, on distingue les francs aux fruits sucrés des sauvageons aux fruits âpres.
Le Merisier ou Cerisier des oiseaux (Prunus avium) est un arbre originaire d'Europe, d'Asie de l'ouest et d'Afrique du nord (Paléarctique occidental) appartenant au genre Prunus de la famille des Rosaceae. Il est parfois appelé cerisier sauvage ou cerisier des bois. Avec le Cerisier acide (Prunus cerasus), c'est l'une des deux espèces de cerisiers sauvages à l'origine des variétés actuellement cultivées.
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