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Statistical physics approaches to subnetwork dynamics in biochemical systems

Publications associées (47)

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Functional data analysis with rough sample paths?

Victor Panaretos, Neda Mohammadi Jouzdani

Functional data are typically modeled as sample paths of smooth stochastic processes in order to mitigate the fact that they are often observed discretely and noisily, occasionally irregularly and sparsely. The smoothness assumption is imposed to allow for ...

TAYLOR & FRANCIS LTD2023

Hierarchy of quasisymmetries and degeneracies in the CoSi family of chiral crystal materials

Philip Johannes Walter Moll, Yi-Chiang Sun, Chunyu Guo

In materials, certain approximated symmetry operations can exist in a lower-order approximation of the effective model but are good enough to influence the physical responses of the system, and these approximated symmetries were recently dubbed "quasisymme ...

AMER PHYSICAL SOC2023

Structure-preserving approaches and data-driven closure modeling for model order reduction

Nicolò Ripamonti

In this thesis, we propose model order reduction techniques for high-dimensional PDEs that preserve structures of the original problems and develop a closure modeling framework leveraging the Mori-Zwanzig formalism and recurrent neural networks. Since high ...

EPFL2022

Analytical prediction of the final error due to noise in a ϕ-OTDR system

Luc Thévenaz, Malak Mohamed Hossameldeen Omar Mohamed Galal, Yuting Yang, Li Zhang, Suneetha Sebastian

An analytical expression to estimate the uncertainty on the frequency shift in ϕ-OTDR systems is established and confirmed by actual data. ...

Optica Publishing Group2022

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In the distributed remote (CEO) source coding problem, many separate encoders observe independently noisy copies of an underlying source. The rate loss is the difference between the rate required in this distributed setting and the rate that would be requi ...

2022

Change of beam distribution due to decoherence in the presence of transverse feedback

Xavier Buffat, Sondre Vik Furuseth

The effect of Landau damping is often calculated based on a Gaussian beam distribution in all degrees of freedom. The stability of the beam is however strongly dependent on the details of the distribution. The present study focuses on the change of bunch d ...

IOP PUBLISHING LTD2019

Stability of working memory in continuous attractor networks under the control of short-term plasticity

Wulfram Gerstner, Alexander Kevin Seeholzer, Moritz Deger

Continuous attractor models of working-memory store continuous-valued information in continuous state-spaces, but are sensitive to noise processes that degrade memory retention. Short-term synaptic plasticity of recurrent synapses has previously been shown ...

PUBLIC LIBRARY SCIENCE2019

Blind and universal image denoising consists of a unique model that denoises images with any level of noise. It is especially practical as noise levels do not need to be known when the model is developed or at test time. We propose a theoretically-grounded ...

2019

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This work explores the combination of a downscaled technology with in-pixel source-follower (SF) optimization, a high column-level gain and an analog implementation of Correlated-Multiple-Sampling (CMS) for noise reduction of CIS readout chains. Transient ...

2017

This paper focusses on the impact of environment mass loading on GPS time-series of position changes and noise characteristic. We make use of position time series of 206 GPS station ranging from 2001 to 2013 globally distributed. Firstly, we investigate th ...

Institute of Rock Structure and Mechanics, AS CR2017