Small populations can behave differently from larger populations. They are often the result of population bottlenecks from larger populations, leading to loss of heterozygosity and reduced genetic diversity and loss or fixation of alleles and shifts in allele frequencies. A small population is then more susceptible to demographic and genetic stochastic events, which can impact the long-term survival of the population. Therefore, small populations are often considered at risk of endangerment or extinction, and are often of conservation concern.
The influence of stochastic variation in demographic (reproductive and mortality) rates is much higher for small populations than large ones. Stochastic variation in demographic rates causes small populations to fluctuate randomly in size. This variation could be a result of unequal sex ratios, high variance in family size, inbreeding, or fluctuating population size. The smaller the population, the greater the probability that fluctuations will lead to extinction.
One demographic consequence of a small population size is the probability that all offspring in a generation are of the same sex, and where males and females are equally likely to be produced (see sex ratio), is easy to calculate: it is given by (the chance of all animals being females is ; the same holds for all males, thus this result). This can be a problem in very small populations. In 1977, the last 18 kakapo on a Fiordland island in New Zealand were all male, though the probability of this would only be 0.0000076 if determined by chance (however, females are generally preyed upon more often than males and kakapo may be subject to sex allocation). With a population of just three individuals the probability of them all being the same sex is 0.25. Put another way, for every four species reduced to three individuals (or more precisely three individuals in the effective population), one will become extinct within one generation just because they are all the same sex.
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A population bottleneck or genetic bottleneck is a sharp reduction in the size of a population due to environmental events such as famines, earthquakes, floods, fires, disease, and droughts; or human activities such as specicide, widespread violence or intentional culling, and human population planning. Such events can reduce the variation in the gene pool of a population; thereafter, a smaller population, with a smaller genetic diversity, remains to pass on genes to future generations of offspring through sexual reproduction.
Habitat fragmentation describes the emergence of discontinuities (fragmentation) in an organism's preferred environment (habitat), causing population fragmentation and ecosystem decay. Causes of habitat fragmentation include geological processes that slowly alter the layout of the physical environment (suspected of being one of the major causes of speciation), and human activity such as land conversion, which can alter the environment much faster and causes the extinction of many species.
The effective population size (Ne) is a number that, in some simplified scenarios, corresponds to the number of breeding individuals in the population. More generally, Ne is the number of individuals that an idealised population would need to have in order for some specified quantity of interest (typically change of genetic diversity or inbreeding rates) to be the same as in the real population. Idealised populations are based on unrealistic but convenient simplifications such as random mating, simultaneous birth of each new generation, constant population size, and equal numbers of children per parent.
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