Influence of Subsurface Layers on the Adsorption of Large Organic Molecules on Close-Packed Metal Surfaces

The asymmetric molecule 4-[trans-2-(pyrid-4-yl-vinyl)] benzoic acid (PVBA) adsorbed on Cu(111) is characterized by scanning tunneling microscopy (STM) and density functional theory (DFT) to determine the influence of subsurface atomic layers on the adsorption. In contrast to the 6-fold symmetry of the first atomic layer of close-packed surfaces, we find that the arrangement of the isolated molecules follows predominantly a 3-fold symmetry. This reduction in symmetry, where the molecule selects a specific orientation along the axes, reveals the contribution of lower-lying Cu layers to the molecular arrangement, Our calculations rationalize the interaction of the substrate with the molecule in terms of electrostatic screening and local relaxation phenomena.

Design of Surface-Supported Bio-inspired Networks for CO2 and O2 Activation at Room Temperature

Daniel Eduardo Hurtado Salinas

The structure of a biological system defines its function. Therefore, nature has developed sophisticated systems that catalyze chemical reactions that are vital for life on earth. For instance, the photosynthesis is a biological process that is partially regulated by the metallo-enzyme RuBisCO (Ribulose-1,5-bisphosphate carboxylase/oxygenase), whose function is to catalyze the capture and transfer of CO2 into organic molecules. This carboxylation reaction occurs at the active site, where a magnesium ion (Mg2+) is bound to organic molecules with carboxylate (COO-) and amine (NH2) functional groups. In the last decades, supramolecular chemistry has proven to be a valid approach to replicate the structural characteristics of these natural metal-organic systems. Metal atoms and organic molecules are used as building blocks to form two-dimensional (2D) metal-organic networks (MONs) on metal surfaces, through a self-assembly process that occurs spontaneously. In these systems the molecules bind to the metal centers and control their oxidation states that, as found in metallo-enzymes, is crucial to perform a catalytic task. Therefore, these supramolecular assemblies show promising features to be explored for heterogeneous catalysis. The main objective of this thesis is to reverse the structure-function equation, that is: instead of finding specific functions of well-known 2D structures for future applications, 2D structures are designed to reproduce the specific functions of well-known bio-systems. Thus, inspired in the structure of the active site of RuBisCO, 2D Mg-based supramolecular assemblies are rationally designed on Cu(100) or Mg(0001) surfaces at room temperature (RT) as a platform for CO2 adsorption. This work is the first study of self-assembly of alkaline earth metal atoms (Mg) with organic molecules ((1,4-benzenedicarboxylic acid (TPA) and 2,4,6-tris(4-aminophenyl)-1,3,5-triazine (TAPT)) on metal surfaces. The first part of this thesis investigates the self-assembly of TAPT molecules. Scanning Tunneling Microscopy (STM) and High Resolution X-ray Photoemission Spectroscopy (HR-XPS) demonstrate that the molecules typically semi-deprotonate to form MONs with the adatoms from the host substrates. The exposure of these structures to CO2 results in the carboxylation of the amino groups. The second part proves that the COOH moieties of TPA molecules fully-deprotonate to form homo-molecular structures. The incorporation of Mg adatoms result in ionic MONs, which reproduce the carboxylate environment of the active site of RuBiSCO. STM, XPS and Density Functional Theory (DFT) analyze the structural changes, the chemical reactions and charge transfer during either the CO2 or O2 adsorption on the Mg2+ centers. The last part focusses on the co-deposition of both molecules to form 2D metallic-hetero-molecular networks with Mg2+ centers. The role of the Mg2+ centers as active sites for molecular adsorption and model systems for gas storage is studied. STM reveals that CO2 partially modifies the network towards a configuration that resembles the active site of RuBisCO. The formation of 3D structures to enhance CO2 adsorption is also evaluated.

EPFL2018

Electronic and magnetic interactions in single molecular and atomic contacts

Verena Katharina Schendel

This thesis encompasses an investigation of organic molecules on metallic substrates as well as a study of electronic and magnetic effects in atomic-sized palladium contacts. For this, a scanning tunneling microscope, operating at 6 K and ultra-high vacuum is used. The clean environment allows characterization of single molecules and atoms under well-defined conditions. Moreover, by examining at low-temperatures it is possible to study electronic and magnetic effects spectroscopically, which would otherwise be thermally obscured. The first part of this thesis focuses on studying organic molecules absorbed on metallic substrates. The molecules under investigation are thiophene derivatives of the archetypical organic semiconductor pentacene. The thiophene derivatives, tetracenothiophene (TCT) and anthradithiophene (ADT), contain either one or two thiophene groups at the terminal benzene rings. The dependence of the deposition temperature as well as the impact of different metallic substrates on their adsorption behavior is studied. When depositing the molecules on a Au substrate at room temperature, the molecules stay fully intact. In contrast, when deposited onto a Cu substrate, a breaking of the thiophene entity is observed. The breaking can be prevented by cooling the substrate to 200 K during deposition. Conductance measurements on the TCT molecules with an intact and broken thiophene entity reveal differences in their transport characteristics. The intact ones exhibit lower conductances than the broken ones. This can essentially be attributed to the fact that the latter ones bind covalently to the substrate, which facilitates transport. ADT deposited on Cu(111) can be reversibly and repeatedly interconverted between two distinct adsorption congurations associated with different conductances, and thus has been investigated as a molecular switch. The switching mechanism is related to a change between two different bonding configurations of the molecule to the substrate. The non-switched state ("off") can be ascribed to a strongly bound state and the switched state ("on") to a weaker bound configuration. The switching process is not only restricted to the location beneath the tip but also can be initiated within an extended area of about 100 nm in radius. This long-ranged addressing is enabled by means of surface state carriers of the Cu(111) surface. The non-local switching process is fully reversible, isomer selective and efficient over radial distances of about 100 nm. The second part of this work examines atomic-sized palladium (Pd) contacts. Pd exhibits outstanding properties owing to its high density of states (DOS) at the Fermi level. This renders Pd a "nearly ferromagnetic" material. Upon size confinement the DOS can be pushed to higher values and Pd can develop a net magnetization. Transport measurements were carried out for two distinct contact geometries; a tip-adatom and and a tip-surface contact geometry. Whereas for the tip-adatom contacts no magnetic state can be detected, measurements conducted for the tip-surface geometry might indicate the presence of a magnetic moment. The differences are attributed to the adsorption configuration of the single bridging atom in the junction. Spectra taken in point-contact with an adatom reveal a distinct inverted V-shaped feature. Presently we attribute this feature to paramagnons.

EPFL2015

Bonding and Charge Transfer in Metal-Organic Coordination Networks on Au(111) with Strong Acceptor Molecules

Nan Jiang, Klaus Kern, Alexander Langner, Sebastian Stepanow

The geometric and electronic structure of two structurally similar metal organic networks grown on the Au(111) surface is investigated by scanning tunnelling microscopy (STM) and spectroscopy (STS) combined with density functional theory (DFT) calculations. The networks are composed of (i) F4TCNQ (C12F4N4, 2,3,5,6-tetrafluoro-7,7,8,8-tetracyanoquino-dimethane) molecules and Au adatoms segregated from the pristine metal surface, and (ii) TCNQ (C12H4N4, 7,7,8,8-tetracyanoquinodimethane) and codeposited Mn atoms. In both cases, the strong electron acceptor character of the molecules results in metal to-ligand charge transfer to the lowest unoccupied molecular orbital (LUMO). The amount of electrons donated from the 4-fold coordinated Mn atoms to TCNQ is higher compared to the 2-fold coordinated Au adatoms to F4TCNQ This behavior is reflected in the appearance of distinct spectral features in STS data in the energy region close to the Fermi level resulting from the intricate interplay between surface states, adatom states, and molecular orbitals. These observations are consistent with a picture in which the LUMO of the TCNQ acceptor molecule hybridizes with Mn and Au substrate metal states becoming practically filled, while the LUMO of F4TCNQ is only partially filled despite being the stronger electron acceptor. Our results reveal the importance of the type of bonding between the strong acceptor and the metal center (Au or Mn) as well as its coordination in the determination of the charge transfer to the adlayer, which is important for its electronic properties.