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Learning convergence prediction of astrobots in multi-object spectrographs

Denis Gillet, Jean-Paul Richard Kneib, Matin Macktoobian, Francesco Basciani

Astrobot swarms are used to capture astronomical signals to generate the map of the observable universe for the purpose of dark energy studies. The convergence of each swarm in the course of its coordination has to surpass a particular threshold to yield a ...

2021

Automated flow control of a multi-lane swimming chamber for small fishes indicates species-specific sensitivity to experimental protocols

In fishes, swimming performance is considered an important metric to measure fitness, dispersal and migratory abilities. The swimming performance of individual larval fishes is often integrated into models to make inferences on how environmental parameters ...

2021

Studying Alignment in a Collaborative Learning Activity via Automatic Methods: The Link Between What We Say and Do

Barbara Bruno, Utku Norman

A dialogue is successful when there is alignment between the speakers at different linguistic levels. In this work, we consider the dialogue occurring between interlocutors engaged in a collaborative learning task, where they are not only evaluated on how ...

2022

Sequence-dependent structural properties of B-DNA: what have we learned in 40 years?

John Maddocks, Daiva Petkeviciute, Rahul Sharma, Marco Pasi, Paolo Carloni

The structure of B-DNA, the physiological form of the DNA molecule, has been a central topic in biology, chemistry and physics. Far from uniform and rigid, the double helix was revealed as a flexible and structurally polymorphic molecule. Conformational ch ...

Springernature2021

Automatic Content Curation of Visual Heritage

Mathieu Salzmann, Frédéric Kaplan, Delphine Ribes Lemay, Nicolas Henchoz, Valentine Bernasconi

Digitization and preservation of large heritage induce high maintenance costs to keep up with the technical standards and ensure sustainable access. Creating impactful usage is instrumental to justify the resources for long-term preservation. The Museum fü ...

2021

NICEpath: Finding metabolic pathways in large networks through atom-conserving substrate-product pairs

Vassily Hatzimanikatis, Jasmin Maria Hafner

Motivation: Finding biosynthetic pathways is essential for metabolic engineering of organisms to produce chemicals, biodegradation prediction of pollutants and drugs, and for the elucidation of bioproduction pathways of secondary metabolites. A key step in ...

OXFORD UNIV PRESS2021

A Rosetta-based protein design protocol converging to natural sequences

Bruno Emanuel Ferreira De Sousa Correia, Stéphane Rosset, Zander Harteveld, Giulia Sormani

Computational protein design has emerged as a powerful tool capable of identifying sequences compatible with pre-defined protein structures. The sequence design protocols, implemented in the Rosetta suite, have become widely used in the protein engineering ...

AMER INST PHYSICS2021

Blind as a bat: spatial perception without sight

Frederike Dümbgen

Among our five senses, we rely mostly on audition and vision to perceive an environment. Our ears are able to detect stimuli from all directions, especially from obstructed and far-away objects. Even in smoke, harsh weather conditions, or at night â situ ...

EPFL2021

Phase separation of self-propelled disks with ferromagnetic and nematic alignment

Ignacio Pagonabarraga Mora, Elena Sesé Sansa

We present a comprehensive study of a model system of repulsive self-propelled disks in two dimensions with ferromagnetic and nematic velocity alignment interactions. We characterize the phase behavior of the system as a function of the alignment and self- ...

AMER PHYSICAL SOC2021

On the use of direct-coupling analysis with a reduced alphabet of amino acids combined with super-secondary structure motifs for protein fold prediction

Jaume Bonet Martinez

Direct-coupling analysis (DCA) for studying the coevolution of residues in proteins has been widely used to predict the three-dimensional structure of a protein from its sequence. We present RADI/raDIMod, a variation of the original DCA algorithm that grou ...

OXFORD UNIV PRESS2021

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Automated flow control of a multi-lane swimming chamber for small fishes indicates species-specific sensitivity to experimental protocols

2021

Studying Alignment in a Collaborative Learning Activity via Automatic Methods: The Link Between What We Say and Do

Barbara Bruno, Utku Norman

2022

On the use of direct-coupling analysis with a reduced alphabet of amino acids combined with super-secondary structure motifs for protein fold prediction

Jaume Bonet Martinez

OXFORD UNIV PRESS2021