Towards Predicting the Runtime of Iterative Analytics with PREDIcT

Machine learning algorithms are widely used today for analytical tasks such as data cleaning, data categorization, or data filtering. At the same time, the rise of social media motivates recent uptake in large scale graph processing. Both categories of algorithms are dominated by iterative subtasks, i.e., processing steps which are executed repetitively until a convergence condition is met. Optimizing cluster resource allocations among multiple workloads of iterative algorithms motivates the need for estimating their resource requirements and runtime, which in turn requires: i) predicting the number of iterations, and ii) predicting the processing time of each iteration. As both parameters depend on the characteristics of the dataset and on the convergence function, estimating their values before execution is difficult. This paper proposes PREDIcT, an experimental methodology for predicting the runtime of iterative algorithms. PREDIcT uses sample runs for capturing the algorithm's convergence trend and per-iteration key input features that are well correlated with the actual processing requirements of the complete input dataset. Using this combination of characteristics we predict the runtime of iterative algorithms, including algorithms with very different runtime patterns among subsequent iterations. Our experimental evaluation of multiple algorithms on scale-free graphs shows a relative prediction error of 10%-30% for predicting runtime, including algorithms with up to 100x runtime variability among consecutive iterations.

PREDIcT: Towards Predicting the Runtime of Large Scale Iterative Analytics

Anastasia Ailamaki, Adrian Daniel Popescu

2013

Rate allocation and optimized decoding in inter-session network coding

Eirina Bourtsoulatze

Recent advances in data processing and communication systems have led to a continuous increase in the amount of data communicated over today’s networks. These large volumes of data pose new challenges on the current networking infrastructure that only offers a best effort mechanism for data delivery. The emergence of new distributed network architectures, such as peer-to-peer networks and wireless mesh networks, and the need for efficient data delivery mechanisms have motivated researchers to reconsider the way that information is communicated and processed in the networks. This has given rise to a new research field called network coding. The network coding paradigm departs from the traditional routing principle where information is simply relayed by the network nodes towards the destination, and introduces some intelligence in the network through coding at the intermediate nodes. This in-network data processing has been proved to substantially improve the performance of data delivery systems in terms of throughput and error resilience in networks with high path diversity. Motivated by the promising results in the network coding research, we focus in this thesis on the design of network coding algorithms for simultaneous transmission of multiple data sources in overlay networks. We investigate several problems that arise in the context of inter-session network coding, namely (i) decoding delay minimization in inter-session network coding, (ii) distributed rate allocation for inter-session network coding and (iii) correlation-aware decoding of incomplete network coded data. We start by proposing a novel framework for data delivery from multiple sources to multiple clients in an overlay wireline network, where intermediate nodes employ randomized inter-session network coding. We consider networks with high resource diversity, which creates network coding opportunities with possibly large gains in terms of throughput, delay and error robustness. However, the coding operations in the intermediate nodes must be carefully designed in order to enable efficient data delivery. We look at the problem from the decoding delay perspective and design solutions that lead to a small decoding delay at clients through proper coding and rate allocation. We cast the optimization problem as a rate allocation problem, which seeks for the coding operations that minimize the average decoding delay in the client population. We demonstrate the validity of our algorithm through simulations in representative network topologies. The results show that an effective combination of intra- and inter-session network coding based on randomized linear coding permits to reach small decoding delays and to better exploit the available network resources even in challenging network settings. Next, we design a distributed rate allocation algorithm where the users decide locally how many intra- and inter-session network coded packets should be requested from the parent nodes in order to get minimal decoding delay. The capability to take coding decisions locally with only a partial knowledge of the network statistics is of crucial importance for applications where users are organized in dynamic overlay networks. We propose a receiver-driven communication protocol that operates in two rounds. First, the users request and obtain information regarding the network conditions and packet availability in their local neighborhood. Then, every user independently optimizes the rate allocation among different possible intra- and inter-session packet combinations to be requested from its parents. We also introduce the novel concept of equivalent flows, which permits to efficiently estimate the expected number of packets that are necessary for decoding and hence to simplify the rate allocation process. Experimental results indicate that our algorithm is capable of eliminating the bottlenecks and reducing the decoding delay of users with limited resources. We further investigate the application of the proposed distributed rate allocation algorithm to the transmission of video sequences and validate the performance of our system using the NS-3 simulator. The simulation results show that the proposed rate allocation algorithm is successful in improving the quality of the delivered video compared to intra-session network coding based solutions. Finally, we investigate the problem of decoding the source information from an incomplete set of network coded data with the help of source priors in a finite algebraic field. The inability to form a complete decoding system can be often caused by transmission losses or timing constraints imposed by the application. In this case, exact reconstruction of the source data by conventional algorithms such as Gaussian elimination is not feasible; however, partial recovery of the source data may still be possible, which can be useful in applications where approximate reconstruction is informative. We use the statistical characteristics of the source data in order to perform approximate decoding. We first analyze the performance of a hypothetical maximum a posteriori decoder, which recovers the source data from an incomplete set of network coded data given the joint statistics of the sources. We derive an upper bound on the probability of erroneous source sequence decoding as a function of the system parameters. We then propose a constructive solution to the approximate decoding problem and design an iterative decoding algorithm based on message passing, which jointly considers the network coding and the correlation constraints. We illustrate the performance of our decoding algorithm through extensive simulations on synthetic and real data sets. The results demonstrate that, even by using a simple correlation model expressed as a correlation noise between pairs of sources, the original source data can be partially decoded in practice from an incomplete set of network coded symbols. Overall, this thesis addresses several important issues related to the design of efficient data delivery methods with inter-session network coding. Our novel framework for decoding delay minimization can impact the development of practical inter-session network coding algorithms that are appropriate for applications with low delay requirements. Our rate allocation algorithms are able to exploit the high resource diversity of modern networking systems and represent an effective alternative in the development of distributed communication systems. Finally, our algorithm for data recovery from incomplete network coded data using correlation priors can contribute significantly to the improvement of the delivered data quality and provide new insights towards the design of joint source and network coding algorithms.

EPFL2013

Holistic, Efficient, and Real-time Cleaning of Heterogeneous Data

Styliani Asimina Giannakopoulou

Data cleaning has become an indispensable part of data analysis due to the increasing amount of dirty data. Data scientists spend most of their time preparing dirty data before it can be used for data analysis. Existing solutions that attempt to automate the data cleaning procedure treat data cleaning as a separate offline process that takes place before analysis begins, while also focusing on a specific use-case. In addition, when the analysis involves complex non-relational data such as graphs, data cleaning becomes more challenging as it involves expensive operations. Therefore, offline, specialized cleaning tools exhibit long running times or fail to process large datasets. At the same time, applying data cleaning before analysis starts assumes a priori knowledge of the inconsistencies and the query workload, thereby requiring effort on understanding and cleaning data that is unnecessary for the analysis. Therefore, from a user's perspective, one is forced to use a different, potentially inefficient tool for each category of errors.In this thesis we aim for coverage and efficiency of data cleaning. We design and build data cleaning systems that employ high-level abstractions to (a) represent and optimize different cleaning operations for data of various formats, and (b) allow for real-time data cleaning that is relevant to data analysis.We introduce CleanM, a language that can express multiple types of cleaning operations. CleanM goes through a three-level translation process for optimization purposes; a different family of optimizations is applied in each abstraction level. Thus, CleanM can express complex data cleaning tasks, optimize them in a unified way, and deploy them in a scaleout fashion.To further reduce the data-to-insight time, we propose an approach that performs probabilistic repair of denial constraint violations on-demand, driven by the exploratory analysis that users perform. We introduce Daisy, a system that seamlessly integrates data cleaning into the analysis by relaxing query results. Daisy executes analytical query-workloads over dirty data by weaving cleaning operators into the query plan.To cover complex data such as graphs, we optimize the building block of data cleaning operations on graph data, that is subgraph matching. Subgraph matching constitutes the main bottleneck when cleaning graph data as it is an NP-complete problem. To optimize subgraph matching, we present a scale-up, radix-based algorithm that starts from an arbitrary partitioning of the graph and coordinates parallel pattern matching to eliminate redundant work among the workers. To address load imbalance, we employ a work stealing technique, specific to the subgraph matching problem. Worker threads steal work from straggler threads by using a heuristic that maximizes the work stolen, while at the same time preserves the order of evaluating candidate vertices.Overall, instead of using offline, specialised tools, this thesis designs abstractions that optimize different cleaning primitives over heterogeneous data, while also integrating data cleaning tasks seamlessly into data analysis. Specifically, we provide (a) a declarative high-level interface backed by an optimizable query calculus and (b) the required optimizations at the underlying data cleaning layers while also taking into consideration the exploratory analysis that users perform.