Summary
The somites (outdated term: primitive segments) are a set of bilaterally paired blocks of paraxial mesoderm that form in the embryonic stage of somitogenesis, along the head-to-tail axis in segmented animals. In vertebrates, somites subdivide into the dermatomes, myotomes, sclerotomes and syndetomes that give rise to the vertebrae of the vertebral column, rib cage, part of the occipital bone, skeletal muscle, cartilage, tendons, and skin (of the back). The word somite is sometimes also used in place of the word metamere. In this definition, the somite is a homologously-paired structure in an animal body plan, such as is visible in annelids and arthropods. The mesoderm forms at the same time as the other two germ layers, the ectoderm and endoderm. The mesoderm at either side of the neural tube is called paraxial mesoderm. It is distinct from the mesoderm underneath the neural tube, which is called the chordamesoderm that becomes the notochord. The paraxial mesoderm is initially called the "segmental plate" in the chick embryo or the "unsegmented mesoderm" in other vertebrates. As the primitive streak regresses and neural folds gather (to eventually become the neural tube), the paraxial mesoderm separates into blocks called somites. The pre-somitic mesoderm commits to the somitic fate before mesoderm becomes capable of forming somites. The cells within each somite are specified based on their location within the somite. Additionally, they retain the ability to become any kind of somite-derived structure until relatively late in the process of somitogenesis. The development of the somites depends on a clock mechanism as described by the clock and wavefront model. In one description of the model, oscillating Notch and Wnt signals provide the clock. The wave is a gradient of the fibroblast growth factor protein that is rostral to caudal (nose to tail gradient). Somites form one after the other down the length of the embryo from the head to the tail, with each new somite forming on the caudal (tail) side of the previous one.
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