Cytoskeleton | EPFL Graph Search

The cytoskeleton is a complex, dynamic network of interlinking protein filaments present in the cytoplasm of all cells, including those of bacteria and archaea. In eukaryotes, it extends from the cell nucleus to the cell membrane and is composed of similar proteins in the various organisms. It is composed of three main components, microfilaments, intermediate filaments and microtubules, and these are all capable of rapid growth or disassembly dependent on the cell's requirements. A multitude of functions can be performed by the cytoskeleton. Its primary function is to give the cell its shape and mechanical resistance to deformation, and through association with extracellular connective tissue and other cells it stabilizes entire tissues. The cytoskeleton can also contract, thereby deforming the cell and the cell's environment and allowing cells to migrate. Moreover, it is involved in many cell signaling pathways and in the uptake of extracellular material (end

Force Transmission in Migrating Cells

Maxime Fred Maurice Fournier

Ability to migrate is a fundamental property of all animal cells. Cell migration underlies such important physiological and pathological processes as embryonic development, immune response, tissue regeneration and cancer metastasis. As cell migration involves forces and motion, it is ultimately a physical phenomenon that should be understood in terms of fundamental physical laws. Cell migration mechanisms are based on the activity of the cytoskeleton, a system of intracellular filaments and motor proteins. During cell migration, forces developed by the cytoskeleton are transmitted, through specific adhesions complexes, to the substrate. Composition and dynamics of the cytoskeleton has been subject of many studies, but it remains poorly understood how the cytoskeleton reactions and its interaction with extra cellular matrix are orchestrated to result in coordinated migration behavior. The main part of this thesis consists of the experiments and analysis of force transmission during cell migration in the experimental system of fish epidermal keratocytes. Our experimental approaches involved microinjection for proteins dynamics quantification, micromanipulation, use of compliant substrate, simultaneous imaging of cytoskeleton and substrate deformation, and the use of cytoskeletal inhibitors. In parallel with the experiments, significant computational work has been performed to program and adapt existing algorithms to analyze experimental data. Thanks to the combination of our experimental and computational approaches, we were able to correlate actin dynamics and traction forces over the whole cell, to map the efficiency of force transmission, and to reveal slipping and gripping mechanisms differentially involved in stress transmission in different parts of the cell. We also investigated contributions of actin assembly and myosin-dependent contractility to force generation and provided evidence that cell translocation could be powered by two different engines. Additionally, we performed micromanipulation experiments to identify the cell polarity cues associated with specific cytoskelatal reactions and regions of the cell. We have also collaborated with the laboratory of one of the leading modellers in the field of cell biophysics to validate a new mathematical model of cell migration and force transmission.

EPFL2011

Characterization of the 5HT3 receptor in live cells and in vitro

Veronica Ponce de Leon

The serotonin type 3 receptor (5HT3R) is a homopentameric, cation selective channel that mediates fast excitatory transmission in the nervous system. It is a member of the Cys-loop family of receptors that include the nicotinic acetylcholine receptor (nAChR), the γ-amino butyric acid (GABA) type A and C and glycine receptors. The 5HT3 receptor is involved in behavioral and digestive disorders and it is therefore an important therapeutic target. The 5-HT3 receptor was expressed in mammalian HEK cells (chapter 2) stably and transiently, and its expression was optimized to obtain 1.6 x 106 receptors per cell for its solubilisation (chapter 3) and purification (chapter 4). Solubilisation of the receptor was evaluated under different conditions such as using CHAPS and C12E9 detergents and homogenization procedures such as vortexing and thurraxing the membranes. Radioligand binding assays indicated that the amount of solubilised receptor was similar in both cases. The stability of the receptor at different temperatures was evaluated. The receptor was more stable when kept at -20 °C compared to 4 or 37 °C. Purification of the 5-HT3 receptor from HEK cells was performed by tandem IMAC (Immobilized Metal ion Affinity chromatography)/IMAC purification and IMAC/streptactin flow column chromatography. The 5-HT3R was obtained 50% pure and a yield of 10 pmoles of receptor binding sites per gram of starting material (dry cells) was obtained. Purified receptor preparations were homogenous. Finally, the receptor was concentrated 5.5 times, which allowed the incorporation of the receptor in lipid vesicles for further studies. Detergent solubilised 5-HT3R was incorporated in lipid vesicles and the functionality of the receptor was assessed by studying calcium ion permeability of the channel using calcium ion sensitive fluorophores (chapter 5). The effect of the cAMP dependent kinase (PKA), on the 5-HT3R was investigated by measuring the KD of the radioactive ligand [3H]GR65630 to the receptor in cells where PKA was activated or inhibited (chapter 6). Finally a dose-response curve of the binding activity of the 5-HT3R upon activation of the PKA was assayed in both HEK and CHO cells (chapter 6). Radioligand binding assays indicated that upon activation of the PKA, there was a decrease of the KD of 30% indicating an increase in the receptor binding affinity to 5-HT upon activation of the PKA (chapter 6). A kinase and cytoskeleton binding protein PDLI1 that was co-purified with the receptor was found phosphorylated upon PK activation (chapter 6). As PDLI1-like proteins are adaptor proteins between kinases, cytoskeleton proteins and sometimes receptors, the latter may be involved in the kinase activation of the receptor. These results contribute to the optimization of the receptor expression, solubilisation and purification in mammalian cells for its incorporation in lipid vesicles and for further structural studies. In addition, this work gave new insights to the mechanisms of channel regulation by PKA phosphorylation at the cell membrane and the intermediate proteins that are involved.

EPFL2009

Probing the differential adhesion hypothesis in the mammary gland using different bioengineered cell culture substrata

Léa Chanson

During tissue development, cells are able to form different layers and to self organize. At the moment, there are two principal hypotheses that try to explain cell sorting. The so called differential adhesion hypothesis (DAH) posits that cells organize according to the level of expression of cell-cell adhesion proteins so as to reduce free-energy in the system. The second hypothesis explains the formation of different germ layers according to cortical tension among cells of distinct phenotypes. For this work, we wanted to study cell sorting in the mammary glands, which are bilayered branching structures composed of outer myoepithelial (MEP) and inner luminal epithelial cells (LEP). Both sorting hypotheses were tested using bioengineered cell culture substrata. Using arrays of micro-wells that were cast in polydimethylsiloxane (PDMS) coupled with quantitative image analysis, we observed that cell sorting occurred over time between LEP and MEP that were isolated by fluorescence-activated cell sorting from primary human mammary epithelial cells. Inhibitors of specific cadherins were able to prevent cell sorting in accordance with the DAH. However, chemical inhibitors of cytoskeletal proteins, which effectively prevented the cells from modulating their innate elasticity, also prevented cell sorting suggesting cortical tension also plays an important role. Thus, our data suggests a third hypothesis, which is essentially a unification of the original two, such that differences in cortical tension are essentially lineage-specific and are governed wholly or in-part by cell-cell adhesion molecules. Experimental resolution of this hypothesis is being actively pursued

2009