Structure–activity relationship

The structure–activity relationship (SAR) is the relationship between the chemical structure of a molecule and its biological activity. This idea was first presented by Crum-Brown and Fraser in 1865. The analysis of SAR enables the determination of the chemical group responsible for evoking a target biological effect in the organism. This allows modification of the effect or the potency of a bioactive compound (typically a drug) by changing its chemical structure. Medicinal chemists use the techniques of chemical synthesis to insert new chemical groups into the biomedical compound and test the modifications for their biological effects. This method was refined to build mathematical relationships between the chemical structure and the biological activity, known as quantitative structure–activity relationships (QSAR). A related term is structure affinity relationship (SAFIR). Structure-biodegradability relationship The large number of synthetic organic chemicals currently in p

Structure-activity relationships of synthetic cannabinoid designer drug RCS-4 and its regioisomers and C4 homologues

Trent Michael Conroy

RCS-4 [(4-methoxyphenyl)-1-yl-(1-pentyl-1H-indol-3-yl)methanone] represents the first of several N-alkyl-3-(methoxybenzoyl)indoles identified by forensic scientists as synthetic cannabinoid (SC) designer drugs. Despite the detection of RCS-4 and several analogues (RCS-2, RCS-3, RCS-2-C4, RCS-3-C4, and RCS-4-C4) in products intended for human consumption, relatively little is known about this class of cannabinoids. The synthesis of all regioisomers of RCS-4 and their C4 homologues is described. This study also systematically explored the structure-activity relationships of this class of SCs at human CB1 and CB2 receptors using an in vitro fluorometric imaging plate reader membrane potential assay. All compounds demonstrated agonist activity at CB1 (EC50 = 54-574 nM) and CB2 (EC50 = 4.5-46 nM) receptors, with the C4 homologues showing a preference for CB2 receptors over CB1 receptors (31-42 times). Since most of the analogues (RCS-2, RCS-3, RCS-2-C4, RCS-3-C4 and RCS-4-C4) are not subject to regulation in much of the world, despite their activities towards CB1 and CB2 receptors, there is a possibility that these analogues will emerge on the black market.

Springer2015

Operando XAS insight in the redox dynamics of VOx species and reducible supports involved in oxidative dehydrogenation of alcohols

Anna Zabilska

Supported vanadia (VOx) belongs to some of the most versatile selective oxidation and reduction catalysts applied for many reactions in the chemical industry and pollution control. Among them, the oxidative dehydrogenation (ODH) of alcohols is particularly attractive since it is one of the main industrial methods of formaldehyde production and a possible route for the transformation of renewable bioethanol to value-added products, such as acetaldehyde and acetic acid. Despite many spectroscopic methods used to investigate the mechanism of this reaction, the details about the redox involvement of VOx species and promoting supports (CeO2 and TiO2) remain debated. In this study, we used an element-specific operando X-ray absorption spectroscopy (XAS) to probe the redox transformations of active sites in vanadia-titania and vanadia-ceria catalysts during ethanol and methanol ODH. By carefully designing the steady-state and transient operando XAS experiments and by applying advanced chemometric methods, we could discriminate specifically and often quantitatively, which role plays each redox couple during the alcohol ODH cycle and uncover hidden structure activity-relationships.Chapter 1 introduces the relevant literature and summarizes the goals and the scope of the thesis.In Chapter 2, we investigate the redox dynamics of active sites in a bilayered VOx/TiOx/SiO2 catalyst (an analog of a widely used VOx/TiO2 catalyst with comparable activity) during ODH of ethanol. Operando time-resolved V and Ti K-edge XAS coupled with a transient experimental strategy quantitatively showed that the formation of acetaldehyde over VOx/TiOx/SiO2 catalyst is kinetically coupled to the formation of a V4+ intermediate, while the formation of V3+ is delayed and its rate is 10-70 times lower. The only very weak redox activity of the Ti4+/Ti3+ couple was detected, which suggests that TiOx species promote the redox activity of VOx indirectly, either via the fast electron transport between VOx species or by changing the electronic structure of VOx species.In Chapter 3, we report on possible difficulties, which can occur during in situ XAS studies of supported vanadia (VOx) catalysts at synchrotron beamlines related to X-ray-induced photochemical reduction of vanadium. We rigorously tested this phenomenon and suggest approaches, which can help to identify and mitigate vanadium photoreduction interfering chemical speciation.In Chapter 4, we focused on the structure-activity relationships in VOx/CeO2 system. We prepared a series of VOx/CeO2 catalysts using high-surface-area CeO2 Using time-resolved operando quick XAS at V K- and Ce L3-edges, we demonstrated that during oxygen cut-off experiments vanadium and cerium change their oxidation states in concert with each other and with the production of acetaldehyde. It suggests that both reducible vanadium and cerium are parts of the same active sites. The maximum VOx/CeO2 activity per mass of catalyst observed at ca. 3 V/nm2 coincides with the maximal amount of cerium atoms, which reversibly change their oxidation state during oxygen cut-off experiments.In Chapter 5, we prove that the mechanistic findings described in Chapter 4 for ethanol ODH over VOx/CeO2 catalysts are also valid for methanol ODH. Moreover, we confirm that the VOx surface density is the main descriptor of the activity for VOx/CeO2 catalysts in alcohol ODH.

EPFL2022

Functionally Optimized Neuritogenic Farinosone C Analogs: SAR-Study and Investigations on Their Mode of Action

Patrick Burch, Andrea Chicca, Karl Gademann

Several natural products derived from entomopathogenic fungi have been shown to initiate neuronal differentiation in the rat pheochromocytoma PC12 cell line. After the successful completion of the total synthesis program, the reduction of structural complexity while retaining biological activity was targeted. In this study, farinosone C served as a lead structure and inspired the preparation of small molecules with reduced complexity, of which several were able to induce neurite outgrowth. This allowed for the elaboration of a detailed structure-activity relationship. Investigations on the mode of action utilizing a computational similarity ensemble approach suggested the involvement of the endocannabinoid system as potential target for our analogs and also led to the discovery of four potent new endocannabinoid transport inhibitors.

Amer Chemical Soc2014

Operando XAS insight in the redox dynamics of VOx species and reducible supports involved in oxidative dehydrogenation of alcohols

Anna Zabilska

EPFL2022