Catalyse enzymatique | EPFL Graph Search

La catalyse enzymatique est le processus par lequel des réactions chimiques sont catalysées dans les systèmes vivants par des protéines spécialisées ou des ARN appelés enzymes. La catalyse enzymatique est indispensable aux organismes vivants pour l'accélération spécifique des réactions nécessaires à leur métabolisme et à la biosynthèse de l'ensemble des biomolécules qui les composent. Les principes de la catalyse enzymatique sont analogues à ceux de la catalyse chimique (voir théorie de l'état de transition). L'enzyme favorise la réaction catalysée en permettant un chemin réactionnel plus favorable, qui abaisse en particulier l'énergie d'activation de la réaction, en stabilisant l'état de transition. La catalyse enzymatique repose à la fois sur l'orientation favorable des composés devant réagir dans le site actif de l'enzyme, leur déformation éventuelle et le positionnement de groupements fonctionnels des chaînes latérales des acides aminés de l'enzyme favorisant la réaction. Le p

Ligand synthesis for homogeneous catalysis

Michael Maurin

Organophosphorus compounds found applications in varied fields of the organic chemistry: they are particularly present in natural compounds such as the deoxyribonucleic acid (DNA) and in the field of catalysis in which their utility is also proven. Thus, this thesis work first focused on the preparation of various phosphorus ligands utilizable in transition metal catalysed reactions. Being given the importance of this type of reaction in organic synthesis, it appears essential to have many ligands at disposal in order to fine-tune and to optimize the reaction conditions as much as possible. Thus, the first objective of this work was to propose a simple and general method for the preparation of monodentate phosphorus ligands. Based on the use of phosphites in substitution for the usual phosphorus trihalides, this method was initially tested during the preparation of different simple triarylphosphines. Thereafter, this method was extended to the synthesis of new ligands having more complex structures. The yields obtained for the latter as well as the variety of the substrates authorized by this method confirmed its value and suggested its application to the synthesis of new heteroaromatic phosphines. The preparation of bidentate phosphorus ligands based on chiral biphenyl motifs was then addressed. For that purpose, the 2,2',6,6' -tetrabromobiphenyl was chosen as a pivot substrate for the development of a modular synthetic approach. Indeed, by means of successive halogen/metal permutational exchanges and after treatment with the suitable electrophile, it was possible to functionalize this substrate, isolate each atropisomer in enantiomerically pure form, and finally convert each one of those into chiral biphenylbisphosphines. In addition, it was also possible, during the synthesis of these ligands, to evaluate the rotational stability of some enantiomerically pure dilithiobiphenyls by means of dynamic nuclear magnetic resonance experiments.

EPFL2007

Rational Design of Pd-Based Catalysts for Selective Alkyne Hydrogenations

Rocio Micaela Crespo Quesada

Traditionally, the search for active and selective catalysts involved a rather tedious "hit-and-miss" approach in which hundreds, if not thousands catalysts were tested until the optimal substance was identified. With the advancing theoretical understanding of catalysis and the development of computational power, a new era of rational catalyst design is dawning. This approach, grounded on first principles, is based on new advances in synthesis, characterization and modeling with the ultimate aim of predicting the expected behavior of a catalyst based on chemical composition, molecular structure and morphology. The rational design of a catalyst is a complex process which spans across several levels of scale. In this thesis, the pursuit of a rational design for Pd-based catalysts effective in alkyne hydrogenations is presented. A multi-level integrated approach was thus applied ranging from the nano-scale design of the active sites for a specific reaction, taking into account its structure sensitivity, to the micro-scale design of the supported Pd nanoparticles including metal-additive and metal-support interactions as well as mass and heat transfer phenomena. In order to rationally design a catalyst at a nano-scale, i.e. a catalyst's active site, several methodologies have been hitherto applied, such as the study on single crystals or model catalysts. Here we present the use of metal nanoparticles with tuned sizes (5-30 nm) and shapes (cubes, octahedra and cube-octahedra) prepared via colloidal techniques. These nanoparticles can be tested per se and represent a new generation of model catalysts, complementing single crystal studies, which inherently lack the complexity of industrial catalysis. However, metal nanoparticles, especially those prepared in a controlled manner in order to tailor their shape and size, require the use of stabilizing and/or capping agents capable of directing their growth. These substances can mask the true catalytic behavior of the nanoparticles. Thus, it is of great importance to study the interactions of the active phase with the substances that are in close contact with it, in the so-called meso-scaled level of rational catalyst design. Therefore, the effect of the nature of the stabilizing agent on the catalytic response was studied, as well as the promoting effect of some of these substances. Finally, a methodology was developed capable of eliminating organic stabilizing agents from the surface of nanoparticles without compromising their morphological stability. The knowledge gathered in the first two levels can be applied further to reach the microscale rational catalyst design. In this thesis, a final catalyst consisting on well-defined stabilizer-free supported Pd nanoparticles was used in the hydrogenation of acetylene. This deep study of the catalytic behavior of well-defined Pd catalysts throughout several levels of scale and complexity have given us the tools needed to perform a rational catalyst design for alkyne hydrogenations. Depending on the specific reaction, the active phase can be optimized in terms of the desired activity and selectivity and can be tuned even further with the use of specific additives. Finally, the appropriate support also exerts a promoting effect on the nanoparticles and ensures their anchoring in addition to avoiding heat and mass transfer artifacts.

EPFL2011

Multiple-Timescale Dynamics of Side-Chain Carboxyl and Carbonyl Groups in Proteins by C-13 Nuclear Spin Relaxation

Mikael Akke, Geoffrey Bodenhausen, Fabien Ferrage

Side-chain carboxyl and carbonyl groups play a major role in protein interactions and enzyme catalysis. A series of C-13 relaxation experiments is introduced to study the dynamics of carboxyl and carbonyl groups in protein side chains on both fast (sub-ns) and slower (mu s-ms) time scales. This approach is illustrated on the protein calbindin D-9k. Fast dynamics features correlate with hydrogen- and ion-binding patterns. We also identify chemical dynamics on mu s time scales in solvent-exposed carboxyl groups, most probably due to exchange between the carboxylate and carboxylic acid forms.

American Chemical Society2008