Enzyme

redresse=1.5|vignette| Représentation d'une α-glucosidase () avec à sa droite le substrat au-dessus des produits de réaction . redresse=1.5|vignette|Diagramme d'une réaction catalysée montrant l'énergie E requise à différentes étapes suivant l'axe du temps t. Les substrats A et B en conditions normales requièrent une quantité d'énergie E1 pour atteindre l'état de transition A…B, à la suite duquel le produit de réaction AB peut se former. L'enzyme E crée un microenvironnement dans lequel A et B peuvent atteindre l'état de transition A…E…B moyennant une énergie d'activation E2 plus faible. Ceci accroît considérablement la vitesse de réaction. redresse=1.5|vignette|Action d'une enzyme sur l'énergie d'activation d'une réaction chimique. Une enzyme est une protéine dotée de propriétés catalytiques. Presque toutes les biomolécules capables de catalyser des réactions chimiques dans les cellules sont des enzymes ; certaines biomolécules catalytiques sont cependant constituées d'ARN et sont d

Model-based scale-up of a continuously operated consolidated bioprocess based on a microbial consortium for the production of ethanol

David Béat Dempfle

This work demonstrated that consolidated bioprocessing is a promising concept for conversion of lignocellulose to ethanol at industrial scale. CBP offers great cost saving potential, is feasible to be operated continuously and may be scaled up due to extensive knowledge of the process from a chemical engineering point of view.Cost savings of up to 27.5% of the total costs compared to conventional bioethanol production from lignocellulose, as stated by a techno-economic assessment, make continuous CBP the strongest lever to reduce processing costs of lignocellulosic ethanol. A cost sensitivity analysis identified scale and yield as the main cost-pushers from a process point of view, whereas the price level of the plant location has the highest impact on the investment conditions.To prove the feasibility of continuous CBP, and therefore the mentioned cost savings, experiments with a maximum titer of 3.258±0.007 g/L, a productivity of 0.025 g/(Lh) and constant enzyme production over 750h were conducted. Furthermore, the continuous experiments showed that experiments with identical volumetric oxygen transfer rate k_L a, but different oxygen fluxes per membrane area, showed titer differences of ca. 80% (1.83 g/L vs 3.26 g/L) in favor of setups with the large membrane surface. A rigorous process model was developed for continuously operated CBP. 9 species were considered (oxygen, glucose, total concentration Trichoderma reesei, secondary mycelia concentration of T. reesei, enzymes, cellulose, cellobiose, yeast density and ethanol). 8 of these 9 species needed to be modelled spatially resolved to account properly for mass transfer limitations. The fungal biofilm thickness d_f was found to be a critical parameter with an optimum for every membrane configuration. Smaller d_f reduced the fungal biofilm volume and thus, the enzyme production and larger d_f increased the diffusion path length causing shortage in nutrient supply as well as lower enzyme concentrations in the bulk. The enzyme synthesis rate of the secondary mycelia was fitted by reducing it by ca. 40% (0.67 FPU/(mLd) vs 1.152 (FPU/(mL*d) compared to batch models.With the process model as centerpiece, a scale-up framework consisting of the model and a set of non-dimensional parameters was developed to scale CBP from 2.7L laboratory scale to 130L pilot scale. The majority of the non-dimensional parameters could be kept constant during scale-up as requested by the similarity paradigm. Necessary changes were simulated with the model. Again, the fungal biofilm thickness d_f proved to be a relevant parameter for scale-up considerations. In general, the relative loss of biofilm volume is compensated by longer residence times since the residence time has by far the least impact on the process economics.Finally, popular rate-controlled separation techniques were investigated regarding their potential with CBP, since they offer the potential to reduce yeast inhibition, to avoid separation limitations by the azeotrope and they are not bound to the vapor-liquid-equilibrium of highly diluted ethanol-water mixtures. However, most of the mechanisms fail to handle the solids of the fermentation broth. Pervaporation, being the most promising concept for in-situ product removal, would be a cost-saving alternative to distillation for batch operation, but is limited by an unfavorable vapor-liquid equilibrium due to low bulk concentrations during continuous operation.

EPFL2022

Production of a thermostable fumarase in Saccharomyces cerevisiae for the bioconversion of fumarate to L-malate

Coralie Signorell

The gene encoding fumarase (fum) from Thermus thermophilus was expressed in yeast Saccharomyces cerevisiae. The recombinant cells were heated at 70°C to inactivate indigenous enzymes and used for the bioconversion of fumaric acid to L-malic acid. By heating the host cells at 70°C, substrate is able to go across the heat-damaged membrane of the microorganism and a desired product can be formed. This new concept, called Synthetic Metabolic Engineering (SME), has already been applied successfully in Escherichia coli. Unfortunately, E. coli membrane is weakened too much during the heat treatment and enzyme leakage appears. The surface structure of yeast is more rigid than that of E. coli and this might be taken as an advantage for application of SME. When continuous or repeated-batch reaction is carried out, enzyme leakage becomes a major drawback. It is assumed that yeast cells could overcome this problem by retaining more enzymes in the cell during and after the heat treatment. In order to prove this hypothesis, a thermophilic fumarase (FUM) was over-expressed in two hosts, S. cerevisiae as well as E. coli. fum was first modified to be over-expressed in yeast cells and FUM was successfully produced in yeasts. Optimization of SME techniques was carried out for yeast cells. Then, enzyme activity and enzyme leakage was investigated for both strains. E. coli showed high level of FUM expression, though considerable amount of enzyme leaked to supernatant. On the other hand, even though the level of FUM expression in S. cerevisiae was low, yeast cells overcome leakage problem and are re-usable. This study showed the first trial of SME in yeast cells and possibility of utilization of yeast as a host strain for SME.

2011

Model-based scale-up of a continuously operated consolidated bioprocess based on a microbial consortium for the production of ethanol

David Béat Dempfle

EPFL2022

Studies on the bioactive form of the antitubercular drug isoniazid and the enzymes involved in its mechanism of action

Model-based scale-up of a continuously operated consolidated bioprocess based on a microbial consortium for the production of ethanol

Production of a thermostable fumarase in Saccharomyces cerevisiae for the bioconversion of fumarate to L-malate

Studies on the bioactive form of the antitubercular drug isoniazid and the enzymes involved in its mechanism of action

Production of a thermostable fumarase in Saccharomyces cerevisiae for the bioconversion of fumarate to L-malate

Model-based scale-up of a continuously operated consolidated bioprocess based on a microbial consortium for the production of ethanol