Infrared spectroscopy | EPFL Graph Search

Infrared spectroscopy (IR spectroscopy or vibrational spectroscopy) is the measurement of the interaction of infrared radiation with matter by absorption, emission, or reflection. It is used to study and identify chemical substances or functional groups in solid, liquid, or gaseous forms. It can be used to characterize new materials or identify and verify known and unknown samples. The method or technique of infrared spectroscopy is conducted with an instrument called an infrared spectrometer (or spectrophotometer) which produces an infrared spectrum. An IR spectrum can be visualized in a graph of infrared light absorbance (or transmittance) on the vertical axis vs. frequency, wavenumber or wavelength on the horizontal axis. Typical units of wavenumber used in IR spectra are reciprocal centimeters, with the symbol cm−1. Units of IR wavelength are commonly given in micrometers (formerly called "microns"), symbol μm, which are related to the wavenumber in a reciprocal way. A common labo

Structures of the (Imidazole)(n)H+ ... Ar (n=1,2,3) complexes determined from IR spectroscopy and quantum chemical calculations ...

Valeriu Scutelnic

Here, we present new cryogenic infrared spectra of the (Imidazole) H-n(+) (n=1,2,3) ions. The data was obtained using helium tagging infrared predissociation spectroscopy. The new results were compared with the data obtained by Gerardi et al. (Chem. Phys. Lett. 501:172-178, 2011) using the same technique but with argon as a tag. Comparison of the two experiments, assisted by theoretical calculations, allowed us to evaluate the preferable attachment positions of argon to the (Imidazole) nH+ frame. Argon attaches to nitrogen-bonded hydrogen in the case of the (Imidazole)H+ ion, while in (Imidazole)(2)H+ and (Imidazole)(3)H+ the preferred docking sites for the argon are in the center of the complex. This conclusion is supported by analyzing the spectral features attributed to the N-H stretching vibrations. Symmetry adapted perturbation theory (SAPT) analysis of the non-covalent forces between argon and the (Imidazole)(n)H+ (n=1,2,3) frame revealed that this switch of docking preference with increasing complex size is caused by an interplay between induction and dispersion interactions.

SPRINGER/PLENUM PUBLISHERS2022

Stabilizing Unusual Oxidation States of Lanthanides in Molecular Complexes: Synthesis, Properties, and Reactivity

Aurélien René Willauer

The chemistry of divalent lanthanides has generated increasing interest in the past years due to their redox properties and unique reaction pathways. Notably, molecular complexes of low-valent lanthanides have been shown to be suitable one-electron reductants that are able to activate inert small molecules such as heteroallenes and dinitrogen in mild conditions. Lanthanide(II) complexes usually undergo mono-electron transfer, but multi-electron transfer can be achieved through multiple one-electron processes in polymetallic complexes. The first part of this thesis describes attempts to expand the redox chemistry of lanthanide complexes and lays the basis for a wider understanding of the chemical and reductive properties of low-valent polynuclear lanthanide complexes. Thus, Chapter 2, 3, and 4, reports the synthesis and characterization of different polynuclear lanthanides(II) complexes of various siloxide ligands. In Chapter 2, the outcome of carbon dioxide reduction (oxalate versus carbonate) by dinuclear Ln(II) tris(tert-butoxy)siloxide complexes, depending on the solvent polarity and on the nature of the Ln ions, was investigated. Furthermore, unprecedented reduction products could be isolated from the reaction with CS2, providing the first example of acetylenedithiolate ligand formation from metal reduction of carbon disulphide. In all cases, it has been shown that cooperative binding of the substrate plays an important role in the outcome of the reaction. Chapter 3 describes a rational route to the first metallasilsesquioxane of a dinuclear divalent lanthanide which can selectively effect the reductive disproportionation of CO2 and the two-electron reduction of azobenzene. In an attempt to confer increased reductive reactivity to Eu(II) ions, Chapter 4 describes the use of the tetraphenyldisiloxanediolate ligand to form polynuclear complexes of Eu(II) that can initiate for the first time carbon dioxide activation by Eu(II) ions in an isolated complex.Differently, until 2019, the +IV oxidation state of lanthanide in molecular complexes remained limited to a single lanthanide ion, cerium. It is only recently that the terbium ion was shown to be able to access the +IV oxidation state in molecular complexes. However, given the broad applications of cerium(IV), the discovery of other molecular complexes of Ln(IV) is of great interest for chemists. Chapter 5 describes the synthesis of the third example of a Tb(IV) complex displaying an open coordination sphere and the very first report of a molecular complex of praseodymium in the +IV oxidation state. The novel Ln(IV) complexes were characterized by UV-Visible, NMR, EPR and IR spectroscopy, magnetometry, single-crystal X-ray diffraction analysis, cyclic voltammetry, and computational studies. In particular, this provided an opportunity to measure and study the luminescent spectra of Pr(IV) for the first time, which upon binding to the siloxide ligand results in a large shift of the ligand triplet state. Furthermore, these complexes have been shown to be appropriate starting materials for the synthesis of Ln(IV) phosphine oxide adducts. Preliminary studies directed towards the isolation of Nd(IV) molecular complexes are discussed.

EPFL2022

Supramolecular structures of polypeptides

Daniela Silvano

The formation of supramolecular structures is a central issue in bio- and nanotechnology and therein plays an important role for many novel developments such as biocompatible materials for integrating living cells or coating for implantable sensing devices as well as for designing smart molecular sensor surfaces for miniaturized bioanalytical techniques. The main focus of this thesis is the investigation of polypeptide layers on surfaces, in particular the formation of self-assembled monolayers (SAMs). SAMs made of long hydrocarbon chains or aromatic molecules comprising surface active and other functional groups have been deeply characterized over decades. Surprisingly, peptide SAMs did not meet the same strong interest despite their great potential in several areas. Natural (20) and artificial amino acids with different physical and chemical properties offer a plethora of novel possibilities to design coating of solid surfaces. In fact their combination in simple oligopeptide sequences provides a huge number of molecular components for the formation of SAMs. Control of SAM features such as density, flexibility, adaptability, interface properties, by tailoring the amino acid sequence opens a new route to manifold applications ranging from fundamental research to nano- and biotechnology. In this thesis different and complementary techniques have been used to investigate the self-assembling ability of polypeptides on surfaces with different physical and chemical properties. Infrared spectroscopy and circular dichroism allowed the determination of the peptide secondary structure on surfaces and in solution. Surface plasmon resonance provided the optical thicknesses of peptide SAMs on gold whereas contact angle measurements have been used to characterize their interfacial properties. In the first part of the thesis, a series of hydrophobic peptides (Ac-Cys-Alax-CONH2, x=3-6) have been self assembled on gold via the thiol group present in the cysteine. The main interest was whether these peptides formed densely packed SAMs with a defined secondary structure within the layer and how the properties of such SAMs depended on the length of the polypeptide backbone. The second part concerns the study of the interactions of an amphipathic helical peptide with various functionalized substrates. The aim was to investigate whether a proper design of the peptide could be used to predetermine its secondary structure on the substrate and whether the orientation of the peptide on the surface could be directly controlled via certain parameters of the surrounding medium. Since the hydrophilic residues of the peptide are histidines, a particular effort was spent in characterizing the peptide adsorption on substrates exposing nitrilotriacetic acid (NTA) moieties. Once established that the adsorption process did not alter its helical structure, the peptide was adsorbed on a substrate exposing two different functional groups: NTA, that could interact with the histidine residues, and methyl groups, that could interact with the hydrophobic ones. The goal was to bind the peptide in different orientation to the same substrate, exploiting the particular spatial distribution of its residues. The third part of this thesis concern the formation of nano- and micro-sized fibrils through molecular self-assembly of simple oligopeptides and protected amino acids. Such systems were chosen as models to investigate the role of the different driving forces in the formation of fibrillar structures. The aromatic protecting group being fixed, it could be shown that the protected amino acids formed fibrils with different sizes and morphologies, or did not form fibrils at all, depending on how strongly their side chains interact. The possibility of forming fibrils by using protected amino acids is of major importance not only in bio-related field but also in organic nanotechnology.

EPFL2008