Surface plasmon resonance

Surface plasmon resonance (SPR) is a phenomenon that occurs where electrons in a thin metal sheet become excited by light that is directed to the sheet with a particular angle of incidence, and then travel parallel to the sheet. Assuming a constant light source wavelength and that the metal sheet is thin, the angle of incidence that triggers SPR is related to the refractive index of the material and even a small change in the refractive index will cause SPR to not be observed. This makes SPR a possible technique for detecting particular substances (analytes) and SPR biosensors have been developed to detect various important biomarkers. Explanation The surface plasmon polariton is a non-radiative electromagnetic surface wave that propagates in a direction parallel to the negative permittivity/dielectric material interface. Since the wave is on the boundary of the conductor and the external medium (air, water or vacuum for example), these oscillations are very sensitive to a

Reversible supramolecular modification of surfaces

Negar Moridi

Enzymes are biocatalysts widely used in a large number of industrial biotech processes as they offer clear advantages over their chemical counterparts. Indeed, enzymes often show high substrate selectivity along with elevated turnover rates. Enzymatic catalysis usually functions under mild conditions of temperature, pressure and acidity. However, the industrial application of enzymes is often limited by their limited stability under operational conditions. Moreover, due to high water solubility of enzymes it is challenging to confined them in a flow reactor system. In order to circumvent these limitations, we have developed a supramolecular strategy that allows the reversible immobilization of active enzyme-polymer conjugates at the surface of filtration membranes. It is based on multivalent host-guest inclusion interactions between the membrane surface and a soluble enzyme-polymer conjugate. Cyclodextrins (CDs) as "host" molecules are covalently attached at the surface of polyethersulfone membranes and a multivalent water-soluble polymer is synthesized as a "guest" molecule. We demonstrate that while this supramolecular surface modification is stable under operational conditions and allows for efficient bio-catalysis, it can be straightforwardly reverse by competitive host-guest interactions. The first part of this manuscript is dedicated to a literature review on selected topics. As the supramolecular strategy we have developed in the course of this PhD research work is based on the use of cyclodextrins as supramolecular host molecules, the first part of this literature review focuses on the physico-chemical characteristics of this class of macrocycles. A special emphasis is done on their ability to form host-guest multivalent inclusion complexes. In this context, we describe the concept of multivalency and the underpinning essential thermodynamic principles, which can be apply to design controllable, directional, and selective self-assemblies. In the second part of this manuscript, we present our strategy to bio-functionalize polymeric membrane surfaces using multivalent reversible inclusion reactions. In more details, the chemical strategy to introduce CD macrocycles, in a covalent fashion, at the surface of the polymeric material is discussed. The synthesis and characterization of an enzyme-polymer conjugate, possessing multiple chemical functional groups (i.e. adamantyl) able to form inclusion complexes with CDs, is presented. It is demonstrated that this supramolecular strategy could be applied to the reversible immobilization of an active enzyme at the surface of polyethersulfone membranes. A similar strategy is applied to the reversible bio-functionalization of gold surfaces and used to prepare sensor chips for surface plasmon resonance (SPR) experiments. Self-assembled monolayers of CDs derivatives are prepared on the surface of a gold sensor chip. A water-soluble protein-polymer conjugate, possessing multiple adamantyl moieties, is synthesized. The supramolecular reversible binding of this new conjugate on the chemically modified SPR chip is demonstrated. The possibility to use this system for antigen/antibody biosensing experiment is successfully confirmed.

EPFL2015

Supramolecular structures of polypeptides

Daniela Silvano

The formation of supramolecular structures is a central issue in bio- and nanotechnology and therein plays an important role for many novel developments such as biocompatible materials for integrating living cells or coating for implantable sensing devices as well as for designing smart molecular sensor surfaces for miniaturized bioanalytical techniques. The main focus of this thesis is the investigation of polypeptide layers on surfaces, in particular the formation of self-assembled monolayers (SAMs). SAMs made of long hydrocarbon chains or aromatic molecules comprising surface active and other functional groups have been deeply characterized over decades. Surprisingly, peptide SAMs did not meet the same strong interest despite their great potential in several areas. Natural (20) and artificial amino acids with different physical and chemical properties offer a plethora of novel possibilities to design coating of solid surfaces. In fact their combination in simple oligopeptide sequences provides a huge number of molecular components for the formation of SAMs. Control of SAM features such as density, flexibility, adaptability, interface properties, by tailoring the amino acid sequence opens a new route to manifold applications ranging from fundamental research to nano- and biotechnology. In this thesis different and complementary techniques have been used to investigate the self-assembling ability of polypeptides on surfaces with different physical and chemical properties. Infrared spectroscopy and circular dichroism allowed the determination of the peptide secondary structure on surfaces and in solution. Surface plasmon resonance provided the optical thicknesses of peptide SAMs on gold whereas contact angle measurements have been used to characterize their interfacial properties. In the first part of the thesis, a series of hydrophobic peptides (Ac-Cys-Alax-CONH2, x=3-6) have been self assembled on gold via the thiol group present in the cysteine. The main interest was whether these peptides formed densely packed SAMs with a defined secondary structure within the layer and how the properties of such SAMs depended on the length of the polypeptide backbone. The second part concerns the study of the interactions of an amphipathic helical peptide with various functionalized substrates. The aim was to investigate whether a proper design of the peptide could be used to predetermine its secondary structure on the substrate and whether the orientation of the peptide on the surface could be directly controlled via certain parameters of the surrounding medium. Since the hydrophilic residues of the peptide are histidines, a particular effort was spent in characterizing the peptide adsorption on substrates exposing nitrilotriacetic acid (NTA) moieties. Once established that the adsorption process did not alter its helical structure, the peptide was adsorbed on a substrate exposing two different functional groups: NTA, that could interact with the histidine residues, and methyl groups, that could interact with the hydrophobic ones. The goal was to bind the peptide in different orientation to the same substrate, exploiting the particular spatial distribution of its residues. The third part of this thesis concern the formation of nano- and micro-sized fibrils through molecular self-assembly of simple oligopeptides and protected amino acids. Such systems were chosen as models to investigate the role of the different driving forces in the formation of fibrillar structures. The aromatic protecting group being fixed, it could be shown that the protected amino acids formed fibrils with different sizes and morphologies, or did not form fibrils at all, depending on how strongly their side chains interact. The possibility of forming fibrils by using protected amino acids is of major importance not only in bio-related field but also in organic nanotechnology.

EPFL2008

Reversible supramolecular modification of surfaces

Negar Moridi

EPFL2015

Supramolecular structures of polypeptides

Daniela Silvano

EPFL2008

Investigation of biomolecular interactions by surface plasmon resonance

Reversible supramolecular modification of surfaces

Supramolecular structures of polypeptides

Investigation of biomolecular interactions by surface plasmon resonance

Reversible supramolecular modification of surfaces

Supramolecular structures of polypeptides